Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0614 ATGGAAAAAGAGTTATTGGAATTGTACAAAGCCGCAAAGACGGCGGCGGATGCAGCAAGCTCCGGCGACGGAGAAACAGAAGAAAGTAGATGCATTGATGCGCTTCAACAGCTCCAGAAATTTCCCGTCAATTACAAGATTCTTGTCACCACCCAGGTGGGTAAACATCTTAAATCTCTGACGAAACATCCAAGGCAGAAAATTCGGTCCTTTGCTATTGACCTAATTGAGATATGGAAAAACATAATTATTAAGGAAACAAGCAATAATAAGAACGGGGGCTCTGATAGTAAGGTTGAGCCATCCAATGGAGAGAGAGCTACAGCTGGGAAATTTAAAAAAAGTCCTTCGGTGAAGGTGGAGAAGGCTGAAACTGTCAAGGTTGAGAAAATTGATAGGAATGGTACGCCAAGGTCAAGCTCAGACAGTACAAAGAAAGCACAAAATGTTGATGTCAAAATTGAGAAAACTGATCGTGCTGCAAATGTCAAGGGGGAGAAGCAAGTTTCTGGGGTGAAGAGAACATCGTCCAGCTCTGCTGCTCCTCTGAAGCTAAAGACTATGATTAAATCTAATGATTCGGTTCGAGACAAAATAAGAGAAATTCTCCAAGAGGCTTTATCTAAGGTTCCTAGAGAGGCTGATGAAGATGTCATGGATGAAGTTAATGCGTGTGACCCTATTCGTGTTGCTGTGACAGTGGAGTCTCTGTTATTTGAGAATTGGGGTCCTTCTAATGGGGCACAAAAGGTCAAGTACAGGTCCCTAATGTTTAACCTTAAGGATCAAAATAACCCAGATTTTCGTAGAAAAGTTCTACTTGGTGTTATTGAGCCAGAGCGACTGATCAACATGAGCACAGCAGAAATGGCTAGCGAGCGAAGGAAACAGGAAAACCAGAAACTTGAACAGAAAGCTTTGTTTGAATGCGAGCGTGGAGCTCAACCAAAAGCCACAACTGATCAATTTAAGTGTGGTCGATGTGGTCAAAGGAAGACTACCTATTACCAAATGCAGACTCGCAGTGCCGATGAACCTATGACGACCTATGTCACTTGTGTTGTCTGCAATAACCGTTGGAAGTTCTGTTAG 1092 0.4286 MEKELLELYKAAKTAADAASSGDGETEESRCIDALQQLQKFPVNYKILVTTQVGKHLKSLTKHPRQKIRSFAIDLIEIWKNIIIKETSNNKNGGSDSKVEPSNGERATAGKFKKSPSVKVEKAETVKVEKIDRNGTPRSSSDSTKKAQNVDVKIEKTDRAANVKGEKQVSGVKRTSSSSAAPLKLKTMIKSNDSVRDKIREILQEALSKVPREADEDVMDEVNACDPIRVAVTVESLLFENWGPSNGAQKVKYRSLMFNLKDQNNPDFRRKVLLGVIEPERLINMSTAEMASERRKQENQKLEQKALFECERGAQPKATTDQFKCGRCGQRKTTYYQMQTRSADEPMTTYVTCVVCNNRWKFC 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0614 363 Pfam Transcription factor S-II (TFIIS), central domain 192 309 IPR003618 GO:0006351
Lal21g0614 363 ProSiteProfiles TFIIS N-terminal domain profile. 1 86 IPR017923 -
Lal21g0614 363 CDD TFIIS_I 23 83 - -
Lal21g0614 363 ProSiteProfiles TFIIS central domain profile. 195 318 IPR003618 GO:0006351
Lal21g0614 363 SMART Cys4_2 323 362 IPR001222 GO:0003676|GO:0006351|GO:0008270
Lal21g0614 363 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 97 IPR035441 -
Lal21g0614 363 ProSiteProfiles Zinc finger TFIIS-type profile. 321 361 IPR001222 GO:0003676|GO:0006351|GO:0008270
Lal21g0614 363 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 25 98 IPR035441 -
Lal21g0614 363 Gene3D - 170 291 IPR036575 GO:0006351
Lal21g0614 363 SMART mid_6 197 301 IPR003618 GO:0006351
Lal21g0614 363 TIGRFAM TFSII: transcription elongation factor S-II 22 363 IPR006289 GO:0003676|GO:0005634|GO:0006368
Lal21g0614 363 CDD Zn-ribbon_TFIIS 316 362 - -
Lal21g0614 363 Pfam Transcription factor S-II (TFIIS) 323 361 IPR001222 GO:0003676|GO:0006351|GO:0008270
Lal21g0614 363 MobiDBLite consensus disorder prediction 87 102 - -
Lal21g0614 363 SUPERFAMILY Zinc beta-ribbon 303 361 - -
Lal21g0614 363 PANTHER TRANSCRIPTION ELONGATION FACTOR TFIIS 1 363 - -
Lal21g0614 363 PIRSF TFIIS 2 363 IPR035100 -
Lal21g0614 363 SMART TFS2_5 8 85 IPR003617 GO:0005634
Lal21g0614 363 ProSitePatterns Zinc finger TFIIS-type signature. 325 360 IPR001222 GO:0003676|GO:0006351|GO:0008270
Lal21g0614 363 SUPERFAMILY Elongation factor TFIIS domain 2 187 293 IPR036575 GO:0006351
Lal21g0614 363 MobiDBLite consensus disorder prediction 87 150 - -
Lal21g0614 363 Gene3D - 292 363 - -
Lal21g0614 363 MobiDBLite consensus disorder prediction 115 136 - -
Lal21g0614 363 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 363 - -
Lal21g0614 363 Coils Coil 285 305 - -
Lal21g0614 363 Pfam TFIIS helical bundle-like domain 34 83 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0614 Lal-Chr21 4629972 4633096 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lal21g0614 TFIIS_M 6.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0614 K03145 - gmx:100811982 577.785