Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0611 ATGGGGAGACGACCAGCTAGGTGTTATAGGCAGATAAAGAATAAACCTTACCCAAAATCAAGGTTTTGCCGTGGTGTTCCTGATCCAAAGATTAGGATCTATGATGTTGGCATGAAGAAGAAAGGGGTTGACGAGTTCCCTTTCTGCGTCCATCTGGTTAGTTGGGAGAAGGAAAATGTTTCAAGTGAAGCATTGGAAGCTGCTAGGATTGCATGCAACAAGTATATGACGAAGTTTGCTGGAAAGGATGCATTCCACTTGCGTGTCAGGGTACATCCTTTCCATGTTCTCAGGATCAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAAACTGGAATGAGAGGTGCATTCGGAAAACCACAGGGTGTATGTGCCAGAGTGGCCATTGGTCAGGTCCTTCTTTCTGTCCGTTGCAAGGACAATAACAGCCACAATGCACAGGAGGCCCTCCGTCGTGCAAAGTTTAAGTTCCCTGGTCGTCAAAAGATTATTGTTAGCAGGAAGTGGGGTTTTACCAAGTTCAATCGTTCTGATTATCTGAGGTATAAGTCAGAGGGCAGAATACTGGCTGATGGTGTCAACGCCAAGCTTCTCGGGTGCCACGGATCATTGGCAAAACGTCAGCCTGGACAAGCTTTTATTGACAGTGCTACCGCTTAG 666 0.464 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDNNSHNAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRSDYLRYKSEGRILADGVNAKLLGCHGSLAKRQPGQAFIDSATA 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0611 221 Gene3D Ribosomal protein L10e/L16 1 218 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lal21g0611 221 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lal21g0611 221 TIGRFAM uL16_euk_arch: ribosomal protein uL16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Lal21g0611 221 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Lal21g0611 221 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 218 - -
Lal21g0611 221 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lal21g0611 221 PANTHER 60S RIBOSOMAL PROTEIN L10 1 218 IPR001197 GO:0003735|GO:0005840|GO:0006412
Lal21g0611 221 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lal21g0611 221 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0611 Lal-Chr21 4613831 4616559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0611 1 220 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 84.545 1.77e-140 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0611 K02866 - egt:105952308 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0611 21 4613831 4616559 Lal4g0563 4 4085591 4088191 LSH
Lal6g0425 6 2695607 2698237 Lal21g0611 21 4613831 4616559 PCT
Lal21g0611 21 4613831 4616559 Lal6g0425 6 2695607 2698237 PCT