Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0608 ATGGAGAGTCTGAAAGCTTCGATTCCAGAAGGTCTGAAGCAAATGATATCAGAGAGCAGCGTCGATAATCTTTCCACAACTTGTTCATATCTCCACCGTTTTTTTCTTCGTTTCAATCCATTTCATCACATGATTACTCAATTGGCAGACCCAAGCTATGCTTTATGTGGTAAGAGTAAGAAAGCTGCTTTGGAATCTAAGCACCTTGGTAATCAGTGTTTTTTAGACAAAGATTATGTCAAAGCTTTGAATTTCTATACTCAGGCATTGCGCAAGGCTCCTTTCGAAGAGGGTGACATGGAAAATAATCTGGTTGTGACGTTGTATGTCAATCGAGCTACTGTATTGCATAAAATGAGTCTTTTGGTGGAGTGTCTGCGAGATTGCACTCGAGCTCTCCAGATATGTCCAAGCCATGCAAAGGCATGGTATAGGAGAAGTCAGGCAAATGCTTCATTGGGAAATTATAAAGACGCGATTTGTGACCTAAATGTGGCTAAAAGTATGGAATCATCATTGGGTGGGAAGAGGAAAATTGAAACTGAACTGAAAAGTATTTTAGACCAATGCAAGAGCGCAAGTATGGCAGTAAAGCACAGTGGTAACTGCTTGAATACAGTGGGTGAGATGCCCCAAATAAAGCTACAGTGTGTCGCGATTCCTGGTAAAGGTAGAGGCATGGCATCATCATGTGACATTTCACCAGGTTCTTTGGTTCATACTGAAGAACCTTATGCTATGATAATATCAAAGCAATACCGGGAAACTCATTGTCATTATTGCTTGAATGACCTGCCAGCTGATAGAGTTCCTTGTATATCGTGTTCAATACCACTGTATTGCTCCCAGCAATGTCAGATACAGGCTGGCGGGCAAACGTTCAGGATTTATCCTGAAGTTCATGGCATTCTCAAAAGTTTACCCAGAGATCTTGGAGAATATGCTGCAGAAGTTATTCAAGGCAATGATTCTGAACAAGAAATTGCGGATATTTCTGAACATAAACATGAATGTCAAGGTGTAAATTGGTCTGGAGTACTGCCATCAGAAATAGTTTTGGCTGGCCGGATACTAGCAAGGTTTTTGCCAAAGAGCACATCTGAAGATATTACAGACTTTGTGGAAGGGCTGGAGCTTTCTCATTGTTATAAACTTATGCCATCTGAAAGCAAATTGGACTCACATATACACGCCATTGTATTGTTATACTGTCTTCAACACTCTAGTAACATTGTGTTTCCCATAGACGGAGTGTCTTTGTCACAGGTTGTCATAATTATTTCTCAAATTAAAGTGAATTGTATGACTGTTATTCGTTTAAAGTCAATAGATGCTCATGTGCTATCCAACCAGTTTGGAGAATTTCCATCCAATGCATATTTAACTAGTAATGTGGAACAGGTTAGAGTGGGAAAAGCTATTTATAAAACTGGCAGTTTATTCAACCATTCTTGCCAACCAAATGTTCATGCATATTTTCTTTCACGTACTCTATGTATACGAACAACCAAATTTGTAGCAGCTGGGTGTGAGCTGGAGTTGTCTTATGGTCCACAGGTAGGTTTGTTGGATTGCAAAGATCGCCTTAACTTACTCAAAGACGAGTATGCCTTTCAATGTCAGTGTACTGGTTGTTCAGAAGCCAATCTGTCTGACATTGTCCTTAATGCTTTTCGTTGTGTCAATCCAAACTGTTCTGGTGCAGTGTTGGATACCAGAGTTGTTGACTGTGAAAAGCAGAAAATCAAGCGCTTCCCTATTGCTGATGAAGCAGACAAGAATAGTGACATTTATGAAGTGTGTATTCGTGCATTCAGCCAAAACGAAGCCTCCGTTCCTATCCGACCTGGATACTGCTTGAAATGTGGTTCTTACTGTGATTTAGAGTCTTCATTTGCTGCAGTTGATAAAGCGATAATATGCATAAAGAGGTTGCAGGATGCAATACTGTCGAAAGAGATTTCAAATACTATTGTTACAGAAGCTTCAAAATTTCTTCATTTGCTGAGATCAAATTTGCATGCATACAACAAGCTTATTGCAGAGGTAGAGGACAACCTTGCCCAGGCTTTTTGTTTATTGGGGGAATTAGAACTGTGTATGGACCATTGTAAAGCATCAATCCAGATTCTGGAGAAGCTATATGATCCTGATGATATTGTTATTGCTTATGAACTTGTGAAGTTTTCTTCCATCCAACTTTCCTTGGGTGATGGTACTGCTGTGGAAAGCATAAGCAGAATAGGTGATATCTTCTCACTTTATTATGGAATTCATGCAGAGTTGGTCTTCCCATATCTTAGATACCTTAGGGGAGAAATTGAAAAAATTTCACTTGAGGGTGCATAA 2349 0.3968 MESLKASIPEGLKQMISESSVDNLSTTCSYLHRFFLRFNPFHHMITQLADPSYALCGKSKKAALESKHLGNQCFLDKDYVKALNFYTQALRKAPFEEGDMENNLVVTLYVNRATVLHKMSLLVECLRDCTRALQICPSHAKAWYRRSQANASLGNYKDAICDLNVAKSMESSLGGKRKIETELKSILDQCKSASMAVKHSGNCLNTVGEMPQIKLQCVAIPGKGRGMASSCDISPGSLVHTEEPYAMIISKQYRETHCHYCLNDLPADRVPCISCSIPLYCSQQCQIQAGGQTFRIYPEVHGILKSLPRDLGEYAAEVIQGNDSEQEIADISEHKHECQGVNWSGVLPSEIVLAGRILARFLPKSTSEDITDFVEGLELSHCYKLMPSESKLDSHIHAIVLLYCLQHSSNIVFPIDGVSLSQVVIIISQIKVNCMTVIRLKSIDAHVLSNQFGEFPSNAYLTSNVEQVRVGKAIYKTGSLFNHSCQPNVHAYFLSRTLCIRTTKFVAAGCELELSYGPQVGLLDCKDRLNLLKDEYAFQCQCTGCSEANLSDIVLNAFRCVNPNCSGAVLDTRVVDCEKQKIKRFPIADEADKNSDIYEVCIRAFSQNEASVPIRPGYCLKCGSYCDLESSFAAVDKAIICIKRLQDAILSKEISNTIVTEASKFLHLLRSNLHAYNKLIAEVEDNLAQAFCLLGELELCMDHCKASIQILEKLYDPDDIVIAYELVKFSSIQLSLGDGTAVESISRIGDIFSLYYGIHAELVFPYLRYLRGEIEKISLEGA 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0608 782 SUPERFAMILY TPR-like 63 712 IPR011990 GO:0005515
Lal21g0608 782 ProSiteProfiles SET domain profile. 211 517 IPR001214 GO:0005515
Lal21g0608 782 Gene3D Tetratricopeptide repeat domain 524 776 IPR011990 GO:0005515
Lal21g0608 782 SMART tpr_5 63 96 IPR019734 GO:0005515
Lal21g0608 782 SMART tpr_5 140 173 IPR019734 GO:0005515
Lal21g0608 782 SMART tpr_5 681 714 IPR019734 GO:0005515
Lal21g0608 782 SMART tpr_5 106 139 IPR019734 GO:0005515
Lal21g0608 782 SUPERFAMILY SET domain 198 547 IPR046341 -
Lal21g0608 782 Gene3D Tetratricopeptide repeat domain 41 198 IPR011990 GO:0005515
Lal21g0608 782 Gene3D SET domain 427 516 IPR046341 -
Lal21g0608 782 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 773 - -
Lal21g0608 782 Coils Coil 666 686 - -
Lal21g0608 782 Pfam SET domain 224 517 IPR001214 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lal21g0608 SET 8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0608 K24634 - gmx:100783548 1192.95