Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0603 ATGGGTTCTGTTGACCGTTGTTATCCACCTCGTGAAGAAGAAATTGCGGTTTTGTCTCTCAATTCGTTGCCTTTAGGGTTTCGATTCCGACCCACTGATGAGGAACTTATTGATTACTATCTCAGACAGAAGATTAATGGAAATTCTCAAGAAGTTTGGGTAATTCGAGAAATCGATGTTTGTAAATGGGAGCCTTGGGATTTGCCTGATTTGTCAGTGGTAAGGAACAAGGACCCAGAATGGTTCTTCTTTTGTCCACAGGACCGTAAGTATCCAAATGGGCATCGGTCGAACCGAGCAACCAGTCACGGGTATTGGAAGGCAACGGGGAAGGATCGCAAAATCAAGTCTGGCTCTCTCTTGATTGGAATGAAGAAGACTCTAGTCTTCTACACTGGTCGCGCACCTAAGGGAAAGAGGACCCATTGGATTATGCATGAGTATCGTCCTACCCTCAAGGAGCTTGATGGTACCAATCCTGGACAGAATGCTTACGTCCTTTGCCGGTTATTTAAGAAGCAAGATGAGAGTCTCGAAATTCCAAACTGTGATGAAGTAGAACAAACTACAGAAGATAAGCATCAAGGAGTTATGAACTCTGGAGATTGCCATAGTGACAGATGCAATGCTCATGATGGACAAAATCAAAGTTGGGAACTTGCTGCAGAGGAGGATCAGTGGTTGTTGGACGTGAATGAATTTTTCAACCCCAAAATCGAGCTATTAGATGCCGATTTATTCTCTCCACATATTTCAACAGATTTTTCTTTTGAAGCAAACAATGAATCAAATGGTCTTTGTGCAGATGAGACAGATATTTCAGACTTCTTTAATTCAGTTGTTAACTGGGATGAAGTGTTGTATGAGAACTCTGGCAGTGATAAGCAGAAGAGCAATGTCGGGTTATCTCAAATTGATTGGCAGATGGCTTCCCCGCCGGATGTTATTAATATCGGCCATGTTTTCAATGTAGCCAATGATTATGAGCAACCAACAAACTATAATAATACGGTTCCTAGCGGCGATACTGGAATCGGGATAAGGACTCAACAGATGCAAAATGAACAACCAAACAGGTGTATGGGCCAAGTTCACAATGTAGACTGTGATTATGAGCAACCAATGAACATTCAAAATAGTGTGGTTGCTAGTGCTGATGCTGGAATCAGGATAAGGACTCGAAAGGTACGAAATGAACAACCAAATAGGAATTTTGCAGAGAAAGGTACTGCACAAAATAGAATTCGTTTGGTTAGTAACTTGGCACTTCATTCAAGCTGTGCACTGGAAGTGCATAATTTAAAACCAGAAACTAAATGGGAGAAGAAAGCTTCAGAAAATCACGCTGCTGATGAGAGTTCTACTGCTACTGGCATTGTGAAAGAATCTGAGTCAACTGACAGTAGAAAGATTTATCGACAAGTTTCAAATGCCGATTCGGTCGGGTTAAAAGACATCTTATTGCTTAGAAGGGTTCCGTTTGTGTCGAAGGCGACCTCCAATCTTACCATGTGGTCTTATGTTATTATAGTTTCTTCTGTTGCAGTGGTCTCATTAGTACTCTTTGCTAACATGTGGGGATATGTTTAA 1590 0.4151 MGSVDRCYPPREEEIAVLSLNSLPLGFRFRPTDEELIDYYLRQKINGNSQEVWVIREIDVCKWEPWDLPDLSVVRNKDPEWFFFCPQDRKYPNGHRSNRATSHGYWKATGKDRKIKSGSLLIGMKKTLVFYTGRAPKGKRTHWIMHEYRPTLKELDGTNPGQNAYVLCRLFKKQDESLEIPNCDEVEQTTEDKHQGVMNSGDCHSDRCNAHDGQNQSWELAAEEDQWLLDVNEFFNPKIELLDADLFSPHISTDFSFEANNESNGLCADETDISDFFNSVVNWDEVLYENSGSDKQKSNVGLSQIDWQMASPPDVINIGHVFNVANDYEQPTNYNNTVPSGDTGIGIRTQQMQNEQPNRCMGQVHNVDCDYEQPMNIQNSVVASADAGIRIRTRKVRNEQPNRNFAEKGTAQNRIRLVSNLALHSSCALEVHNLKPETKWEKKASENHAADESSTATGIVKESESTDSRKIYRQVSNADSVGLKDILLLRRVPFVSKATSNLTMWSYVIIVSSVAVVSLVLFANMWGYV 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0603 529 SUPERFAMILY NAC domain 18 173 IPR036093 GO:0003677|GO:0006355
Lal21g0603 529 Pfam No apical meristem (NAM) protein 24 149 IPR003441 GO:0003677|GO:0006355
Lal21g0603 529 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 18 418 - -
Lal21g0603 529 ProSiteProfiles NAC domain profile. 23 173 IPR003441 GO:0003677|GO:0006355
Lal21g0603 529 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 18 418 - -
Lal21g0603 529 MobiDBLite consensus disorder prediction 442 462 - -
Lal21g0603 529 Gene3D NAC domain 32 177 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0603 Lal-Chr21 4537727 4544491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0603 15 194 NAC Transcription Factor Family AT4G35580 70.556 2.22e-90 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal21g0603 NAM 4.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0603 - - lang:109338230 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0603 21 4537727 4544491 Lal21g0603 21 4537727 4544491 ECH
Lal22g0383 22 2435983 2439794 Lal21g0603 21 4537727 4544491 PCT
Lal6g0407 6 2552927 2556731 Lal21g0603 21 4537727 4544491 PCT
Lal21g0603 21 4537727 4544491 Lal22g0383 22 2435983 2439794 PCT
Lal21g0603 21 4537727 4544491 Lal6g0407 6 2552927 2556731 PCT