Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0597 ATGTTAAATATGGGTGATGTAGTGGTGAATAATGAGAACTTGAAGTTAGTGGGAATGGAAGAAGAAAGAATAGAAGAATTGAAAGGGTTGATGAGGTGGGAGAAGTTCTTGCCAAAAATTGTATTAAGGGTTCTATTGGTTGAAGCTGATGATTCTACTAGGCAGATTATAGCAGCACTTCTCAGGAAATGTAATTATAAGGTGGCTGCTGTTCCGGATGGCTTGAAGGCATGGGAAATACTCAAAGGAAGACCACACGATATTGATCTAATACTCACAGAAGTGGATCTTCCATCCATATCTGGCTACGCACTTCTCACATTAATTATGGAGCATGAGATTTGTAAAAACATCCCTGTAATAATGACGTCGTCACAAGATTCAGTTAGCACAGTATACAAATGCATGATGAGAGGTGCTGCTGACTATCTCGTTAAGCCTCTTAGGAAAAATGAACTGAGGAATTTGTGGCAACATGTTTGGAGAAGACAATCATCAAACATTGGCGTAAGTGGCCCCAAAGAAGAGAGTACTGGCACTGCACAGCAGAAGGTTGAAGCCACTGCTGAAAACAATGCTACAAGTAATCGTTCGAGTGGTGATGCTGCTTGCATCCAGAGAAATAAGGAATTAATTGAGAAAGGAAGTGATGCACAGAGCTCTTGTGCAAGGCCTGATTTGGAAGCTGAAAGTGGCCGTATCGATATCGAGAAGGAATATTCTCTGATGAAATGTGGTGAAGCATATCCAAATGGAACAAGGATGCAAGAGGTTGAAAGATGCATTCACTTAGGTCAGACATTGGTCACACACGATAGTCACGCTGGAGGATTAACCGTGGGTATCTCCAAAAATGGTGAGGCAAGCACTGCTAGTGGCAAGGATGGTGATCCAGAGCATTTTCGGGGTGCTAACATTAGCGGTGAGGCTCATGGCAATGACTATGTTCAAATTAGCTCATTTAAGGAAGCTATTGACTTGATTGGAGCATTTCAAACTCGTCCGAACTGCAGTGCCAAAAATTCCACTGTTGATTCCACAGGAAAATTTGACTTTTCTCCACAATTGGATCTTTCCCTGAGAAGATCTCATCCCAGCAACTCTCAGAATGAGATCTCTGAAGAAAGGCACACCCTCATGCATTCTAATGCTTCAGCTTTCAAGTGGTATACTAACAGGGCGTTGCAAGCCGCACCTGCAGTGTTGGTTAGCTTCTCTTATCAACAAAGAGAACAAAGAACAAATTGTGAGAAAAGTATCCCCCATATCGCTACCGGCTGCAACTCAGATAGTTCCACACCTAGTATGCAAAGATGTATTCTGTCTCCAGTTACAGCCGAATCAAAAGAATCTGAGTTTGCAACTTCACACTCTCAGCAAGCTCATTGTCTTCCAATTCCAGTAAAAGGTGTAAGGTTTAATGATTTATGTGCACCCTATGATTCTGTACTTCCTCCGATGTCTCTTACTCAATCAGGTCCACCATCTATGCCAAGTCCTACTTCAGCTATACTCCTTCAACCCACCGTTCAAGTAAATGCATTTTATCGGTCAAATATTAGAAAAAACAATTCAGAGCTGCTTTATGAATCTCATGGTCCAAACGGAAACAACGCCACAAACCAAATGGTGTATACACTGGGACACAGATCAGAAAATGCAGAGGACCGAGGACATATCTCTCCTGCAAATGATCAAAGTGTATCCAGTAGTTTCTGTAATGTTAATGCAAGCCATGTAAATAACATGAGTTATGGAAGCAATTGTGAAAATAGCAGCAATTTTGATCAAATTGCTACTTTGAAGTCAGCTTCAGAGGGTAAGAATGAAGACCTCACAAACAACGGAAGTTCTCATCGATCTACCCTGAGAGAAGCAGCCCTAAACAAGTTTCGCTTGAAACGGAAGGAGAGATGCTATGAGAAGAAGGTTCGATACGAGAGCAGAAAGAAACTAGCCGAGCAGCGCCCCAGAGTTAAAGGACAATTTGTTCGTCAAGTGCATTCTGAACCTCTTTCTGTAGAAAAAGATGGTAAAGAATATCAATAG 2049 0.4178 MLNMGDVVVNNENLKLVGMEEERIEELKGLMRWEKFLPKIVLRVLLVEADDSTRQIIAALLRKCNYKVAAVPDGLKAWEILKGRPHDIDLILTEVDLPSISGYALLTLIMEHEICKNIPVIMTSSQDSVSTVYKCMMRGAADYLVKPLRKNELRNLWQHVWRRQSSNIGVSGPKEESTGTAQQKVEATAENNATSNRSSGDAACIQRNKELIEKGSDAQSSCARPDLEAESGRIDIEKEYSLMKCGEAYPNGTRMQEVERCIHLGQTLVTHDSHAGGLTVGISKNGEASTASGKDGDPEHFRGANISGEAHGNDYVQISSFKEAIDLIGAFQTRPNCSAKNSTVDSTGKFDFSPQLDLSLRRSHPSNSQNEISEERHTLMHSNASAFKWYTNRALQAAPAVLVSFSYQQREQRTNCEKSIPHIATGCNSDSSTPSMQRCILSPVTAESKESEFATSHSQQAHCLPIPVKGVRFNDLCAPYDSVLPPMSLTQSGPPSMPSPTSAILLQPTVQVNAFYRSNIRKNNSELLYESHGPNGNNATNQMVYTLGHRSENAEDRGHISPANDQSVSSSFCNVNASHVNNMSYGSNCENSSNFDQIATLKSASEGKNEDLTNNGSSHRSTLREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVHSEPLSVEKDGKEYQ 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0597 682 ProSiteProfiles Response regulatory domain profile. 43 161 IPR001789 GO:0000160
Lal21g0597 682 CDD psREC_PRR 44 147 - -
Lal21g0597 682 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 29 656 - -
Lal21g0597 682 Gene3D - 42 257 - -
Lal21g0597 682 ProSiteProfiles CCT domain profile. 624 666 IPR010402 GO:0005515
Lal21g0597 682 MobiDBLite consensus disorder prediction 650 682 - -
Lal21g0597 682 Pfam Response regulator receiver domain 44 155 IPR001789 GO:0000160
Lal21g0597 682 SUPERFAMILY CheY-like 42 165 IPR011006 -
Lal21g0597 682 MobiDBLite consensus disorder prediction 167 201 - -
Lal21g0597 682 SMART REC_2 42 157 IPR001789 GO:0000160
Lal21g0597 682 Pfam CCT motif 624 666 IPR010402 GO:0005515
Lal21g0597 682 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 656 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0597 Lal-Chr21 4497599 4501889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0597 606 669 Response Regulator Gene Family AT5G24470 72.727 8.05e-21 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lal21g0597 Response_reg 5e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0597 K12130 - gmx:100777119 988.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0597 21 4497599 4501889 Lal21g0597 21 4497599 4501889 ECH
Lal17g0620 17 4425484 4429527 Lal21g0597 21 4497599 4501889 LSH
Lal21g0597 21 4497599 4501889 Lal4g0540 4 3927137 3931507 LSH