Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0594 ATGAGTGGTCGTTTTTCTCGCACGATTTATGTTGGCAACCTGCCTTCAGATATCAGAGAATCAGAAATTGAAGATATCTTCTACAAGTATGGCCACATAGTGGAGATTGAGTTGAAGGTTCCACCTCGCCCTCCTTGTTACTGTTTTGTTGAGTTTGACAATGCTCGAGATGCAGAAGATGCAATCCGGGGTCGAGATGGATACAACTTCGATGGTTGTCGATTAAGGGTGGAGCTTGCCCATGGTGGTAGAGGGCCATCATCAAGTGATCGTCGTGGCTATGGCAGTAGTAGTGGTGGTGGTAGTGGCGGGGCACGTTTTGGCATTTCACGCCATTCTGAATTTCGAGTTATTGTCCGCGGACTCCCATCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTTTGTTTTGCTGAGGTTACCCGTGATAGTGAAGGGACTTTTGGCCTTGTTGATTACACCAATTATGACGACATGAAATATGCTATTCGGAAGCTCGATGACACTGAGTTCAGAAATCCGTGGGCAAGATCCTATATTCGTGTGAGAAAGTTTGAGAGCAGTCGTTCGAGGAGCCGCAGCAGAAGCCGCAGCAGAAGCCGCAGCAGGAGCAGAAGTCCCAAAAGGAATACGAGTAGATCTTTGGAGCGATCTGTGTCTAGGTCAAGATCTAGATCTAGGTCACGATCCAGATCTAGGTCACAATCCAAATCTAGGTCAAGATCCAGATCTAGGTCAGCATCACCAACCAAGCCTTCTAGGCCAAGATCACAATCAAGATCTGAATCTCCACGCCAGTCGGTGAAGGAATCTTTTACTTATACCAATGAAAACGTTCTGCTGTTCGCGAGTCTGTTAGAAATGTTAACATGGAAGTTGGGTCATGAACAGCCAGGTCTGAGTTGGCCTAGGCTTAACTGGAGGAATCTCGGTCTGAGTGCAGGTCATGGCCAGGCTTGGCTTAGGCATGGTGCTAGCCAGGCTTGGCTTAGGCATAGTCCTGGCTTCCTTGAGGAGAGTTGTAGACATGTTGTTGAGACTTTGAGGCACCTTGGTGTAAGAAGGCGTGAGCATGATGCATGA 1101 0.4768 MSGRFSRTIYVGNLPSDIRESEIEDIFYKYGHIVEIELKVPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGSSSGGGSGGARFGISRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSEGTFGLVDYTNYDDMKYAIRKLDDTEFRNPWARSYIRVRKFESSRSRSRSRSRSRSRSRSRSPKRNTSRSLERSVSRSRSRSRSRSRSRSQSKSRSRSRSRSASPTKPSRPRSQSRSESPRQSVKESFTYTNENVLLFASLLEMLTWKLGHEQPGLSWPRLNWRNLGLSAGHGQAWLRHGASQAWLRHSPGFLEESCRHVVETLRHLGVRRREHDA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0594 366 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 256 - -
Lal21g0594 366 MobiDBLite consensus disorder prediction 192 276 - -
Lal21g0594 366 MobiDBLite consensus disorder prediction 247 276 - -
Lal21g0594 366 CDD RRM1_SF2_plant_like 8 79 - -
Lal21g0594 366 MobiDBLite consensus disorder prediction 230 246 - -
Lal21g0594 366 MobiDBLite consensus disorder prediction 215 229 - -
Lal21g0594 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Lal21g0594 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 179 IPR000504 GO:0003723
Lal21g0594 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 193 IPR000504 GO:0003723
Lal21g0594 366 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR34A 2 256 - -
Lal21g0594 366 MobiDBLite consensus disorder prediction 200 214 - -
Lal21g0594 366 CDD RRM2_SF2_plant_like 115 190 - -
Lal21g0594 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Lal21g0594 366 MobiDBLite consensus disorder prediction 81 107 - -
Lal21g0594 366 Gene3D - 2 112 IPR012677 -
Lal21g0594 366 Gene3D - 115 191 IPR012677 -
Lal21g0594 366 SMART rrm1_1 8 78 IPR000504 GO:0003723
Lal21g0594 366 SMART rrm1_1 116 189 IPR000504 GO:0003723
Lal21g0594 366 SUPERFAMILY RNA-binding domain, RBD 6 181 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0594 Lal-Chr21 4467651 4476594 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0594 4 173 Eukaryotic Initiation Factors Gene Family AT4G34110 28.249 4.14e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0594 K12890 - gmx:100786491 346.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0594 21 4467651 4476594 Lal21g0594 21 4467651 4476594 ECH
Lal17g0609 17 4367714 4373296 Lal21g0594 21 4467651 4476594 LSH