Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0593 ATGGCTGTTGCTGAGAATGTTGGAACCAAAATTGATTCTTCAAGTCAAAATTTGGATAACAGTGTTGTTTCATCTGAAACCACTAAGGTGGAGAAACCAAAGCCTGCAAATGGTTCCCTCAATGGTGATCAGAATCTGAATGGTGTTTTCAACCACCATGATAGAGCTCCCAAGGTTTCAGTCCCAAACAGCAACTACATGGTTCAAATGGGTCAGATGGGAAATGGGTTCGAAGGAAATGGGGTCCAGACCCTGCAGATGGTGGCGAATAATAATGGGTATGGTGGGGTTAATGGAGAGAATGGGGGTGAGAGTTTCAAGAAGGATATGAGAGATTTGGAAGAACTTTTGTCAAAGTTGAATCCCATGGCTGAGGAATTTGTGCCCTCATCACTGACAAACAATCTTGGTTACTTAGCTGGACTTGGTGCTGCTGGGTTTGGGTACCCTAACAATTTTTTATTCCCCAATAAGTATGGGAATGCTAACGGAGAAAAAAACAGAAGGAGGAAGAATGACTCTAATCAGGGGAAGCGAAGAGTTAATAATAAAATAGAAATGGTGAGAAGAGAAGAGATGGTTCGGAGTACTGTTTATGTGTTTGACATTGATCAACTGGTTACAGAAGAGCAGCTGGCAGCTCTCTTTCTTAATTGTGGGCAGGTTGTTGATTGCCGTATTTGTGGGGATCCTAGTTCCAGTCTTCGGTTTGCTTTTGTTGAGTTTACTAATGAGGAAGGTGCAAGGGCTGCTTTGAGCCTGTCTGGGACCATGCTTGGATTTTACCCGTTGAAAGTGCTACCTTCAAAAACTGCCATTGCACCTGTTAATCCAACATATTTGCCTAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATATATTGCACTAACATCGACAAGAAGCAAATGTGGCTAATGATTTTAAAAGTGCTTTTCTTGTTACTGCTGCAGCTTACTCAAGCAGATGTCAAACAATTCTTTGAATCTATTTGTGGAGAGGTTCGACGCTTGAGGCTTCTTGGGGATAACCAGCATTCTACTCGAATTGCATTTGTCGAATTCACGGTGGCTGAAAGTGCAATTGCAGCTCTGAATTGTAGTGGTGTGCTTTTGGGTTTAATGCCTATAAGGGTTAGTCCATCGAAGACACCAGTTCGGTCTCGCCTTCCTCGTGATCCTATGCACTGA 1194 0.4288 MAVAENVGTKIDSSSQNLDNSVVSSETTKVEKPKPANGSLNGDQNLNGVFNHHDRAPKVSVPNSNYMVQMGQMGNGFEGNGVQTLQMVANNNGYGGVNGENGGESFKKDMRDLEELLSKLNPMAEEFVPSSLTNNLGYLAGLGAAGFGYPNNFLFPNKYGNANGEKNRRRKNDSNQGKRRVNNKIEMVRREEMVRSTVYVFDIDQLVTEEQLAALFLNCGQVVDCRICGDPSSSLRFAFVEFTNEEGARAALSLSGTMLGFYPLKVLPSKTAIAPVNPTYLPRSEDEREMCSRTIYCTNIDKKQMWLMILKVLFLLLLQLTQADVKQFFESICGEVRRLRLLGDNQHSTRIAFVEFTVAESAIAALNCSGVLLGLMPIRVSPSKTPVRSRLPRDPMH 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0593 397 Gene3D - 279 382 IPR012677 -
Lal21g0593 397 Pfam Ataxin-2 C-terminal region 117 131 IPR009818 -
Lal21g0593 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 320 373 IPR000504 GO:0003723
Lal21g0593 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 260 IPR000504 GO:0003723
Lal21g0593 397 MobiDBLite consensus disorder prediction 1 42 - -
Lal21g0593 397 MobiDBLite consensus disorder prediction 8 42 - -
Lal21g0593 397 CDD RRM1_CID8_like 194 273 IPR034823 -
Lal21g0593 397 SMART rrm1_1 197 267 IPR000504 GO:0003723
Lal21g0593 397 SMART rrm1_1 312 381 IPR000504 GO:0003723
Lal21g0593 397 MobiDBLite consensus disorder prediction 160 179 - -
Lal21g0593 397 MobiDBLite consensus disorder prediction 163 179 - -
Lal21g0593 397 SUPERFAMILY RNA-binding domain, RBD 196 302 IPR035979 GO:0003676
Lal21g0593 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 271 IPR000504 GO:0003723
Lal21g0593 397 Gene3D - 157 273 IPR012677 -
Lal21g0593 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 385 IPR000504 GO:0003723
Lal21g0593 397 SUPERFAMILY RNA-binding domain, RBD 286 390 IPR035979 GO:0003676
Lal21g0593 397 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 397 - -
Lal21g0593 397 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0593 Lal-Chr21 4459816 4464913 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0593 184 381 Eukaryotic Initiation Factors Gene Family AT2G36660 27.404 2.17e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0593 - - aip:107622933 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0593 21 4459816 4464913 Lal21g0593 21 4459816 4464913 ECH
Lal17g0608 17 4357089 4362198 Lal21g0593 21 4459816 4464913 LSH
Lal21g0593 21 4459816 4464913 Lal4g0534 4 3878675 3883567 LSH