Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0592 ATGGCGGTTGCTGAGAATTCTGGAACCAAAATTGGTTCTTCAAGTCAAAATTTGGACAACAGTGTAGTCTCATCTGACACAACCACTGAGGTGGAGAAATCAAAACCCAGAAACGGTTCAATCAACGGTGGTGATCAGAACCTGAACGGTGTTTTCAATAATCATGATATAGCTCCAAACGGCAACTACAATGCTCAAATGGGTCAGATTCGAAATGGGTTTGAAGGACATGGGGTTCAGAATCAGCAGATTGTGGTGAATAATAATGGGTATGGTGGGGTTAATGGAGAGAATGGAGGTGAAAGTTTCAAGAGGGATATGAGGGATTTGGAGGAGCTTTTGTCAAAGCTGAATCCCATGGCTGAGGAATTTGTGCCTCCATCACTGATAAACAATTTTGGTTACTTAGCTGCACATGATGCTGTGTTTGGTTACCCTAACAATTTTGTACTCCCCAATAATTATGGGATTGTTAATGGGCAAAATAACAGAAGGAGGAAGAATGGCTATAATCACGGGAAGCGAAGAGCCAGTAATAAAATGGAGCTGGAGAGGAAAGAAGAGATGATTAAGAGGACTGTTTATGTGTCTGACATTGATCAACTGGTTACCGAAGAGCAGCTGGCAGCCCTCTTTCTTAACTGTGGTCAGGTTGTTGATTGTCGTGTATGTGGGGATCCTAATTCTATTCTTCGGTTTGCCTTTGTTGAGTTTACAGATGAGGAAGGTGCAAGGGCTGCTTTGAACCTGTCTGGAACAATGCTTGGATATTACCCGTTGCGAGTGCTGCCTTCAAAAACTGCCATTGCACCTGTCAATCCAACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCGAGAACAATTTATTGCACTAATATCGACAAGAAGCTTACCCAAGCAGATGTCAAACACTTCTTTCAATCTATTTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGAGAATACCAGCATTCTACTCGAATTGCATTTGTAGAGTTCACAGTGGCCGAGAGTGCAATTGCCGCTCTGAGCTGCAGTGGCGTGATTTTGGGTTCACTGCCTATAAGGGTTAGTCCATCAAAGACACCAGTTCGGTCTCGTTTCCCCCACACTGCTATGCAATGA 1134 0.4374 MAVAENSGTKIGSSSQNLDNSVVSSDTTTEVEKSKPRNGSINGGDQNLNGVFNNHDIAPNGNYNAQMGQIRNGFEGHGVQNQQIVVNNNGYGGVNGENGGESFKRDMRDLEELLSKLNPMAEEFVPPSLINNFGYLAAHDAVFGYPNNFVLPNNYGIVNGQNNRRRKNGYNHGKRRASNKMELERKEEMIKRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEEGARAALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFQSICGEVQRLRLLGEYQHSTRIAFVEFTVAESAIAALSCSGVILGSLPIRVSPSKTPVRSRFPHTAMQ 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0592 377 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 377 - -
Lal21g0592 377 MobiDBLite consensus disorder prediction 1 57 - -
Lal21g0592 377 SUPERFAMILY RNA-binding domain, RBD 164 268 IPR035979 GO:0003676
Lal21g0592 377 CDD RRM2_CID8_like 285 366 IPR034825 -
Lal21g0592 377 CDD RRM1_CID8_like 190 269 IPR034823 -
Lal21g0592 377 SUPERFAMILY RNA-binding domain, RBD 280 370 IPR035979 GO:0003676
Lal21g0592 377 SMART rrm1_1 290 361 IPR000504 GO:0003723
Lal21g0592 377 SMART rrm1_1 193 263 IPR000504 GO:0003723
Lal21g0592 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 358 IPR000504 GO:0003723
Lal21g0592 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 257 IPR000504 GO:0003723
Lal21g0592 377 Gene3D - 155 269 IPR012677 -
Lal21g0592 377 Gene3D - 276 370 IPR012677 -
Lal21g0592 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 267 IPR000504 GO:0003723
Lal21g0592 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 365 IPR000504 GO:0003723
Lal21g0592 377 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 377 - -
Lal21g0592 377 Pfam Ataxin-2 C-terminal region 114 128 IPR009818 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0592 Lal-Chr21 4437240 4441210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0592 194 353 Eukaryotic Initiation Factors Gene Family AT1G34140 25.610 6.77e-10 58.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0607 17 4347078 4351551 Lal21g0592 21 4437240 4441210 LSH
Lal21g0592 21 4437240 4441210 Lal4g0533 4 3871779 3875368 LSH