Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0585 ATGATGGAGGAAGATAAGCATATTCAAGCATCAACAAAAGGAAAAAATATCCAAAGCTTGATCTCTTCTTGCTCAGACCCACAACATCAAAATCCAAGGAAGAAAAAGAACAAGTTAGAGAAAAACAAGAGAAGGTTCAGTGATGAACAAATAAGATCACTTGAATGCATATTCGAGTCAGAATCATTGCTTGAGCCAAGGAAAAAGTTGCAACTAGCAAGAGATCTTGGTTTGCAGCCTCGCCAAGTTGCTATATGGTTCCAGAACAGAAGGGCAAGGTGGAAATCAAAAAGGATGGAGCAAGAGTACAGAAAACTCAGAGATGAATATGATAAGTTAGCATCTTTGTTTGAATCTCTAAAGAATGATAAGGAATCTTTACAATTACAGTTGCAGAAGCTAAGGGAATTGGTGGGGACATATGATGGTAGAAGAGAAGTGAAGGGTGGCAAGGAAAATAGCACAGAAGAGGGTGGTTCTGGCAGTGGATACAATCATTGTAGGGTTGAAGTAAAGCCAAGTTTTTCAAATGAGGGTTTGGAAGATAGAGAATGCATGAATTATTTAGATGATCAAAATGAGAAGAACATAAGGAGTGAAAAATCTGAAGAAAGAGGAGAGGAACAACATCAAAATCTGAGAATGGATGAGCATGAAGAGATTCTTCCTTTGGCATCAACACTTGAAAAATGGTATAATGTGGATCCAAATGGTGGTATCTTAGACCAATCATGCAGCAGTTCTCAATGGTTAGATTTTTGGACTTGA 768 0.3789 MMEEDKHIQASTKGKNIQSLISSCSDPQHQNPRKKKNKLEKNKRRFSDEQIRSLECIFESESLLEPRKKLQLARDLGLQPRQVAIWFQNRRARWKSKRMEQEYRKLRDEYDKLASLFESLKNDKESLQLQLQKLRELVGTYDGRREVKGGKENSTEEGGSGSGYNHCRVEVKPSFSNEGLEDRECMNYLDDQNEKNIRSEKSEERGEEQHQNLRMDEHEEILPLASTLEKWYNVDPNGGILDQSCSSSQWLDFWT 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0585 255 MobiDBLite consensus disorder prediction 192 215 - -
Lal21g0585 255 MobiDBLite consensus disorder prediction 12 28 - -
Lal21g0585 255 CDD homeodomain 44 98 IPR001356 GO:0003677
Lal21g0585 255 SMART HOX_1 40 101 IPR001356 GO:0003677
Lal21g0585 255 PRINTS Lambda-repressor HTH signature 68 77 IPR000047 GO:0003677
Lal21g0585 255 PRINTS Lambda-repressor HTH signature 77 93 IPR000047 GO:0003677
Lal21g0585 255 Coils Coil 89 137 - -
Lal21g0585 255 Gene3D - 21 103 - -
Lal21g0585 255 Pfam Homeodomain 41 95 IPR001356 GO:0003677
Lal21g0585 255 SUPERFAMILY Homeodomain-like 24 97 IPR009057 -
Lal21g0585 255 MobiDBLite consensus disorder prediction 1 46 - -
Lal21g0585 255 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 3 255 IPR045224 GO:0003700
Lal21g0585 255 MobiDBLite consensus disorder prediction 145 168 - -
Lal21g0585 255 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 3 255 - -
Lal21g0585 255 Pfam Homeobox associated leucine zipper 97 137 IPR003106 GO:0006355|GO:0043565
Lal21g0585 255 ProSiteProfiles 'Homeobox' domain profile. 37 97 IPR001356 GO:0003677
Lal21g0585 255 ProSitePatterns 'Homeobox' domain signature. 72 95 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0585 Lal-Chr21 4362503 4364931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0585 34 255 Homeobox Transcription Factor Family AT2G46680 41.631 2.47e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal21g0585 Homeodomain 9.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0585 K09338 - gmx:100499926 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0617 6 3981737 3983435 Lal21g0585 21 4362503 4364931 ECH
Lal22g0559 22 3812809 3814709 Lal21g0585 21 4362503 4364931 ECH
Lal18g1051 18 13528718 13529878 Lal21g0585 21 4362503 4364931 ECH
Lal21g0585 21 4362503 4364931 Lal21g0585 21 4362503 4364931 ECH