Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0578 ATGGATTTATTGGTTCACGCTTCGCTAGTCGAAGCGTCTGAGTTACTTTCGCACACCATCTTCACAATATTCGAGACTGTTAAAGCAGCCAATGAGGTTGTCATTCACAAGGAAAATTTTAAGAAATTCTCAATTCACTTGGAGAAGATCTCATTTATATTGAAGTCTTTGTCAAAGGAAGACAGACACAATCCCGTGAGCTTGATTAATGCTATGAATGCTCTCAACCGAGAGGTTCAAGTTGCTAAGAAGCTGGTTTTTGAATGCAATAGTAGAGGTAAGGTTTATCTTTTAATCAATTCTAGAAGGATTGTTTCTCGCTTGAAGGGTTGCATTGAAGATATAAGTCGAGCAGTAAGCCTCATCGCTTTGTCCTCTTTGGACATTAACTCTGGTTTGAACAAAGAGATAGTTAAGTTATGCCAGAACATGTTGGATTCTGAGTATCAAACAGCTGCAGTAGACGAGGAAATCTTGGAAAAAATTGAGACAGCGATAAACGAGGGAAACGCTGATCGGTCATATGCGAATCACTTGCTGGTTCGTATCGCAGATGCTATTGGTATCTCCACTGAGCATGCTGCTTTGAAGAGAGAATTTGAAGAGCTAAAAAGTGACATGGAGATTGATAAGTCTAGGAAAGATATGGCGGAAGTTCTACATATGGAGCAGATTATTGCAGTGCTTGAAAAGTCTGATTCGATAACTTCAGCGCGAGAGAAGGAAACAAAGTATTATGAAAAGAGAAATTCATTGGGGCGGAGACCGTTGGCGCCTTTGCATTCATTTTACTGCCCAATCTCTCTTGATATTATGGTGGATCCTGTGGAAACTTCTTCTGGCAAGACATTTGAGAGAAGTTCCATAGAGAGATGGTTCGCCGAAGGGAACAGTCATTGTCCCTTGACCATGTTGCCGGTGGATACTTCTGTCCTAAGGCCTAATAAGACCCTCAGACAGTCTATCCAAGAATGGAAAGACAGGAACACGATCATTACGATTTCTACTATCAAATCCAAACTTGAAGAAGATGAAGAAGAGGAAATACTTCAGTCTTTAGACAAATTGCGGGATATATGTTTAGAAAGAGAGGTTCACCGAGAATGGTTGAAAATGGAGAATTACATTGCTGTTCTTGTTGGACTTCTTGGTTCTAAAAATCGTGAAATAAGGAAGCATGTTCTGATCATCCTGTCTTTGCTTTCAGTGGATAGTGAAGAGAACAAGGAAGATATTGCTAAAGTGGATAACGCACTTGGATCAATTGTTCGATCACTCGCACGTCAAATTGAGGAAAGTAAGTTAGCATTGGAGTTGCTGTTGGAGTTATCAAAAAGTGAAATGGTGCGCGGTCTTGTCGGTAACATTCAAGGAAGCATACTTCTCCTGATGACAATGTTAAATAGTGATGATGTTGAAGCGTCCAAAAATGCTCACGAGCTTCTGGAAAACCTCTCTTTCCTTGAACAGAATGTCATAGAGATGGCAAAGGCAAATTATCTTAAGCCTTTGCTGCTGAACCTATCTACAGGACCAGAAAACATGAAGATAATCATGACGGAAACTTTGTCAAAAATTGCATTGACTGACCAGAATAAATTGTCCTTAGTCAAAGATGGAGCACTGCAGCCTCTTCTTCACCTGCTCTTAAATAACGATGTGGAAATCAAGAAAGTGGTTGTCAAAGCTCTACTTCAGCTCTCAACTTTGCCGGAGAATGGCCTGCAGATGATAAGGGAAGGTGTTGCTCAACCGCTATTGGAACTGCTATACTGCCACAGTTTACAGTCTCCTATTTTGCGCGAACAAGTTGTTTCCACAATCATGCATCTTGCCATATCAACTACTCACCAACAAGCTGAAGAAGAACAAGTTTCATTGTTAGATTCTGAGGAAGAGATATTCAAATTCTTCTCTCTAATTTCATTAACCGGACCTGAAATACAAAGCATGATTCTCAAAGCTTTCCAGGCATTGTGCAAGTCTTTCTCTGGCTTCACCACCAGAAAGAGGTTGAGACAGATATCAGCTGCCATAGTATTGGTCCATTTGGTAGAGCTTAATGCCCAAACAGTGCGGATAGAAGCCTTGAAGCTTTTCTATTGCTTAGCAGAAGACGGTGATTACAGCAACTTCTCACCTCATATAACTGAAAGATTTATTGAAGTCTTGCTTACCATCATTGAGGCTTCTGATGAAGCTGAAGAAATGGTTACTGCTATAGGCATCATCTCAAAACTACCACAGGAGTCACACATAACACAGTGGCTTCTAGCTTCCAGGGCACTTCAAATTATTTTGGCTTGTCTTACAGATCAAAACAAACATGCATCACACAAGAAGCAAGTGATAGAGAACTCGGTCCAAGCACTTTGTCGTTTTACTGTCTCATCAAATGTAGAGTTGCAGAAGAGAGTAGCTGAAGAAGGCCTAATCCCAGTGCTCGTGCGATTGCTGGTTGTTGGAACACCTTATTCGAAACAAAGTGTAGCCATTTCAATCAAGCAGTTTTCAGAAAGTTCATACCGATTGAGCAAGCTGATAAAGAAGCCGAGTATTTTCAAAGCCTGCTTTATAGCAAGTGAAATTGGTTGTCCAGCACACAAAGGCACTTGTACAGTTGAGTCTTCATTCTGCATTATACAAGCTAATGCCGTGGATCCCCTCGTGAAGTTGCTTGGGGAGCAAGATATCGAAACATGTGAAGCTTCCTTAGATGCCCTATTGACTTTGCTGGATGTTGAAGCACCACAAAGTGGAAGTAAGGTACTTGCAGATGCAAATGCTATTACACCAATGATAAAATTGTTGAGCCTTCAAGCTTCAAGGTTGCAGGAAAAAACTCTAATAGCCTTAGAACAGATTTTTCAACTGGATGAAGTGAAAAATAAGTACAAAACTAAGGCCACAATGCCCTTGGTGGATATAACTCAGAACAAAGATAGCCATTTGAAAAGTCTTGCTGCCAAATGCCTTGCTCAACTGGGTGTGCTTGATAAACAGCCTGGTTTGGCATCTCTAATTGGGCCTGGGTTGGATTTAGAAAGATTTTCATCTGAAGAGGTGTCTGCACAGAACCAAGTGAAGGCTTCTGTTCAACGAAAAATACGGCAAAGTATTGCAGAAGAGTATCCTGGCCTTGAACCGGTGATGGATGATATACTTCCCAAGAAGTCCCCTCTTATAGTTGCTAAATGTCAGAACCATCTCAATCTGGTTCTAGTGAACAATGTGCCTTTGTTTTTCAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTTCATCAATATCCTGATATAATGAAGAAATTACAAGTTGACCGTGGTGCAATAAGATTTGTCTTGTCGGGGGCAAACATAATGTGTCCTGGTCTGACATCTCCCGGGGGTGTTTTGGATGAGGAAGTGGAGGCAGAAAGTCCAGTGGCAATCATGGCTGAAGGAAAACAGCATGCTCTCGCTATTGGCTTTACAAAAATGTCAGCAAAAGACATATGGAGAAACTTGATTGAAGATGTTGTTAGAGCTGCAATGCCAAACAATGATTGGTGGATTCCTGTTTTCTAA 3573 0.4114 MDLLVHASLVEASELLSHTIFTIFETVKAANEVVIHKENFKKFSIHLEKISFILKSLSKEDRHNPVSLINAMNALNREVQVAKKLVFECNSRGKVYLLINSRRIVSRLKGCIEDISRAVSLIALSSLDINSGLNKEIVKLCQNMLDSEYQTAAVDEEILEKIETAINEGNADRSYANHLLVRIADAIGISTEHAALKREFEELKSDMEIDKSRKDMAEVLHMEQIIAVLEKSDSITSAREKETKYYEKRNSLGRRPLAPLHSFYCPISLDIMVDPVETSSGKTFERSSIERWFAEGNSHCPLTMLPVDTSVLRPNKTLRQSIQEWKDRNTIITISTIKSKLEEDEEEEILQSLDKLRDICLEREVHREWLKMENYIAVLVGLLGSKNREIRKHVLIILSLLSVDSEENKEDIAKVDNALGSIVRSLARQIEESKLALELLLELSKSEMVRGLVGNIQGSILLLMTMLNSDDVEASKNAHELLENLSFLEQNVIEMAKANYLKPLLLNLSTGPENMKIIMTETLSKIALTDQNKLSLVKDGALQPLLHLLLNNDVEIKKVVVKALLQLSTLPENGLQMIREGVAQPLLELLYCHSLQSPILREQVVSTIMHLAISTTHQQAEEEQVSLLDSEEEIFKFFSLISLTGPEIQSMILKAFQALCKSFSGFTTRKRLRQISAAIVLVHLVELNAQTVRIEALKLFYCLAEDGDYSNFSPHITERFIEVLLTIIEASDEAEEMVTAIGIISKLPQESHITQWLLASRALQIILACLTDQNKHASHKKQVIENSVQALCRFTVSSNVELQKRVAEEGLIPVLVRLLVVGTPYSKQSVAISIKQFSESSYRLSKLIKKPSIFKACFIASEIGCPAHKGTCTVESSFCIIQANAVDPLVKLLGEQDIETCEASLDALLTLLDVEAPQSGSKVLADANAITPMIKLLSLQASRLQEKTLIALEQIFQLDEVKNKYKTKATMPLVDITQNKDSHLKSLAAKCLAQLGVLDKQPGLASLIGPGLDLERFSSEEVSAQNQVKASVQRKIRQSIAEEYPGLEPVMDDILPKKSPLIVAKCQNHLNLVLVNNVPLFFSVRDGPYMPTLRLLHQYPDIMKKLQVDRGAIRFVLSGANIMCPGLTSPGGVLDEEVEAESPVAIMAEGKQHALAIGFTKMSAKDIWRNLIEDVVRAAMPNNDWWIPVF 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0578 1190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 335 IPR013083 -
Lal21g0578 1190 SUPERFAMILY ARM repeat 640 913 IPR016024 -
Lal21g0578 1190 SMART arm_5 750 796 IPR000225 GO:0005515
Lal21g0578 1190 SMART arm_5 570 613 IPR000225 GO:0005515
Lal21g0578 1190 SMART arm_5 799 839 IPR000225 GO:0005515
Lal21g0578 1190 SMART arm_5 917 957 IPR000225 GO:0005515
Lal21g0578 1190 SMART arm_5 529 569 IPR000225 GO:0005515
Lal21g0578 1190 SMART arm_5 873 913 IPR000225 GO:0005515
Lal21g0578 1190 CDD MCT1_N 1017 1091 - -
Lal21g0578 1190 ProSiteProfiles PUA domain profile. 1103 1167 - -
Lal21g0578 1190 Gene3D - 662 862 IPR011989 -
Lal21g0578 1190 Gene3D - 336 661 IPR011989 -
Lal21g0578 1190 Gene3D - 13 126 IPR036537 GO:0007166
Lal21g0578 1190 SUPERFAMILY PUA domain-like 1104 1170 IPR015947 -
Lal21g0578 1190 TIGRFAM unchar_dom_2: uncharacterized domain 2 1074 1169 IPR004521 GO:0003723
Lal21g0578 1190 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Lal21g0578 1190 Pfam Pre-PUA-like domain 1019 1100 IPR041366 -
Lal21g0578 1190 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 44-LIKE 8 1001 - -
Lal21g0578 1190 Coils Coil 193 213 - -
Lal21g0578 1190 Gene3D - 1018 1177 - -
Lal21g0578 1190 Pfam U-box domain 263 329 IPR003613 GO:0004842|GO:0016567
Lal21g0578 1190 SUPERFAMILY ARM repeat 333 620 IPR016024 -
Lal21g0578 1190 SUPERFAMILY ARM repeat 880 999 IPR016024 -
Lal21g0578 1190 Pfam PUA domain 1105 1167 IPR002478 GO:0003723
Lal21g0578 1190 SMART pua_5 1104 1181 IPR002478 GO:0003723
Lal21g0578 1190 CDD RING-Ubox_PUB 263 304 IPR045210 -
Lal21g0578 1190 Gene3D - 870 1017 IPR011989 -
Lal21g0578 1190 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Lal21g0578 1190 SUPERFAMILY RING/U-box 249 331 - -
Lal21g0578 1190 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 540 582 IPR000225 GO:0005515
Lal21g0578 1190 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 1001 - -
Lal21g0578 1190 Pfam Armadillo/beta-catenin-like repeat 879 908 IPR000225 GO:0005515
Lal21g0578 1190 Pfam Armadillo/beta-catenin-like repeat 530 568 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0578 Lal-Chr21 4302119 4313134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0578 261 1009 U-box Gene Family AT1G76390 27.509 6.96e-59 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0578 - - gmx:100818273 1409.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0578 21 4302119 4313134 Lal21g0578 21 4302119 4313134 ECH