Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0570 ATGGGAAAAAAAGGAGGTAGTTGGTTCTCATCTGTGAAGAAAGTTTTCAAGTCATCTTCTAAGGACTCGTCTCTATTAGATAAGAAGAAGGACAAAGAAGAGAAATGGCAACATGAAGCACCAGAGGTTTTGTCTTTTGAGCATTTTCCTGTAGAGAGTTCACCTGATATTACCAATGAGGGGAGTACCACATCTACTCCGGTGACTGAAGATAACCATCATGCCGTTGCCTTTGCAGAGGCAACAGCTGCAGCGGCCGAAGCTGCGGTGGCGGCTGCTAAAGCTGCCGCTAGGGTTGTGAGAATGGCAGGCTATGAACGACACACTAAAGAAGAAAGGGCAGCAACAATCATTCAATCTTACTATAGAGGTTACCTTGCTCGACGAGCACTTCTTGCTTTGAAGGGATTAGTGAGGCTGCAAGCACTTGTGAGGGGGCATAATGTGAGGAAACAAGCACAAGTGACAATGAAATGCATGCAAGCATTGGTGAGAGTACAAGCAAGGGTAAAAGCTAGAAGGCTTCAATTAACTAAGGAAAAGCTTCAAAGAACATTGGAAGAACATGAGCAAAGACAAGTCAAGGAACATGTGCCTCCTTATAAGCCTATGAGTCCTATGATGACAAAGTTGCACATTGATGGGTGGGACAATAGGCATCAAAGTAGCCAGAAGATTCAGAGAAATGACTTGATGAAACATGAGGCTGCAATCAAAAGGGAGAGAGCTCTTGCATATGCTTTCAATTATCAGCAACAATATTTGCAGATAAACCCAAATGGTGATGATATTGGAAGCTATGCAAAAGAACATGAAACAGCTCAATTGGGTTGGGAATGGTTGCCATCACAATCACAACATGTTAAGAACCTATGGGCCCCACTTGAGATGACACTCACTACTTCAGCCACAACAACCACAGATGACATGTCTGAAGAAAAAACAGTTCAAATGGACATGGGCCTAATGGGTAAAGGCTTTCTTGATTCAAGCCCGATATCTGATAGGTACAGCCAGGGACAGCATAGTATTGGGGTACCTAGCTATATGGCCCCAACCCAGTCTGCAAAAGCCAAGGTTCGGAATCAAAGTCCGTTTAGAGAACGGGCTTTATATGGGCCTAAATTGATATCACCATCAAGGAAAAATTCTCTCAATGGGTTGGGTTGTGACTCATCAAGCTCTTGTGGGGCTATTACAACTCACCAATTTCCTAAAAGCCCAAGCCCACAAATAAATGGGGTTCAACTCCAATCAAGACGGATTTCGAGTGGTAGCAAAGATAATATTGGCATTGAGGATTGGGCCCTCCCCCTGGGAGCCCGTGGTTTGCAATGA 1338 0.4417 MGKKGGSWFSSVKKVFKSSSKDSSLLDKKKDKEEKWQHEAPEVLSFEHFPVESSPDITNEGSTTSTPVTEDNHHAVAFAEATAAAAEAAVAAAKAAARVVRMAGYERHTKEERAATIIQSYYRGYLARRALLALKGLVRLQALVRGHNVRKQAQVTMKCMQALVRVQARVKARRLQLTKEKLQRTLEEHEQRQVKEHVPPYKPMSPMMTKLHIDGWDNRHQSSQKIQRNDLMKHEAAIKRERALAYAFNYQQQYLQINPNGDDIGSYAKEHETAQLGWEWLPSQSQHVKNLWAPLEMTLTTSATTTTDDMSEEKTVQMDMGLMGKGFLDSSPISDRYSQGQHSIGVPSYMAPTQSAKAKVRNQSPFRERALYGPKLISPSRKNSLNGLGCDSSSSCGAITTHQFPKSPSPQINGVQLQSRRISSGSKDNIGIEDWALPLGARGLQ 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0570 445 Coils Coil 165 192 - -
Lal21g0570 445 ProSiteProfiles IQ motif profile. 135 162 IPR000048 GO:0005515
Lal21g0570 445 MobiDBLite consensus disorder prediction 20 41 - -
Lal21g0570 445 SMART iq_5 110 132 IPR000048 GO:0005515
Lal21g0570 445 SMART iq_5 133 154 IPR000048 GO:0005515
Lal21g0570 445 Pfam Protein of unknown function (DUF4005) 331 385 IPR025064 -
Lal21g0570 445 Gene3D - 108 159 - -
Lal21g0570 445 MobiDBLite consensus disorder prediction 15 41 - -
Lal21g0570 445 PANTHER IQ-DOMAIN 21 1 411 - -
Lal21g0570 445 ProSiteProfiles IQ motif profile. 111 139 IPR000048 GO:0005515
Lal21g0570 445 PANTHER IQ-DOMAIN 5-RELATED 1 411 - -
Lal21g0570 445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 156 IPR027417 -
Lal21g0570 445 Pfam IQ calmodulin-binding motif 138 153 IPR000048 GO:0005515
Lal21g0570 445 Pfam IQ calmodulin-binding motif 112 131 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0570 Lal-Chr21 4227380 4233728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0570 1 411 IQD Protein Family AT3G49260 47.682 1.05e-85 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0570 - - aprc:113873497 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0570 21 4227380 4233728 Lal21g0570 21 4227380 4233728 ECH
Lal17g0569 17 4055660 4060445 Lal21g0570 21 4227380 4233728 LSH
Lal21g0570 21 4227380 4233728 Lal4g0496 4 3558553 3562392 LSH