Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0569 ATGGATTTGGACAGCATTGAGTGTGTATCATCCTCTGATGGCATGGATGAGGATGAGATCCATCTTCACCATCAACAATCTGAATTTTCTTCCACAAAACCTCGCAATGGAGCCACCAATCACAATAATTCTACGGTTCCAACAGCCATTGCTCCTGCAACCAGCGTCCATGAATTGCTTGAATGCCCTGTTTGTACCAATTCAATGTACCCTCCAATTCATCAGTGTCATAATGGCCACACGCTGTGTTCCACTTGTAAAACAAGGGTGCACAACCGATGTCCCACTTGCAGACAAGAACTCGGAGATATTAGGTGCCTGGCACTGGAGAAGGTTGCTGAATCACTCGAGTTACCTTGCAAGTTCTACTCTCTTGGATGTCCGGAAATCTTTCCGTACTACAGCAAGCTTAAGCATGAGACATTATGCGATTTTAGGCCTTACAGTTGTCCTTATGCAGGATCAGAGTGTTCTATTGTAGGGGATATTCCCTTCCTTGTTGCACATTTGAGGGATGATCATAAGGTGGACATGCACACAGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCTCGTGAAGTAGAGAACGCGACCTGGATGCTCACAGTATTCCATTGTTTTGGCCAATACTTCTGCCTTCATTTTGAAGCTTTCCAGATTGGCACGGCCCCTGTTTACATGGGATTCCTTCGTTTCATGGGCGATGAGAATGAGGCTCGGAACTACAGCTATAGCCTAGAAGTCGGGGGCAATGGTAGGAAACTCATATGGGAGGGTATGCCACGAAGTGTTCGTGATAGCCACCGTAAAGTCAGGGATAGCCATGATGGCCTCATTATTCAACGAAGTATGGCCTTGTTTTTTTCCGGTGGGGACAGGAAGGAGCTGAAACTCCGAATCACGGGAAGAATATGGAAGGAACAGCAGAATGCAGATGCTAGGGTGTCCATACCAAATCTTTGA 969 0.4613 MDLDSIECVSSSDGMDEDEIHLHHQQSEFSSTKPRNGATNHNNSTVPTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKFYSLGCPEIFPYYSKLKHETLCDFRPYSCPYAGSECSIVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQIGTAPVYMGFLRFMGDENEARNYSYSLEVGGNGRKLIWEGMPRSVRDSHRKVRDSHDGLIIQRSMALFFSGGDRKELKLRITGRIWKEQQNADARVSIPNL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0569 322 CDD RING-HC_SIAHs 60 98 - -
Lal21g0569 322 SUPERFAMILY TRAF domain-like 115 307 - -
Lal21g0569 322 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 169 303 IPR008974 GO:0005515
Lal21g0569 322 SUPERFAMILY RING/U-box 56 102 - -
Lal21g0569 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 114 IPR013083 -
Lal21g0569 322 Pfam Seven in absentia protein family 104 303 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lal21g0569 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 168 IPR013083 -
Lal21g0569 322 ProSiteProfiles Zinc finger RING-type profile. 62 98 IPR001841 -
Lal21g0569 322 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 315 - -
Lal21g0569 322 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 315 - -
Lal21g0569 322 CDD Sina 176 304 - -
Lal21g0569 322 ProSiteProfiles Zinc finger SIAH-type profile. 115 175 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0569 Lal-Chr21 4216807 4221050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0569 10 310 C3H Transcription Factor Family AT2G41980 70.100 1.08e-160 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0569 K04506 - gmx:100810573 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0575 22 3938584 3941696 Lal21g0569 21 4216807 4221050 ECH
Lal21g0569 21 4216807 4221050 Lal21g0569 21 4216807 4221050 ECH
Lal21g0569 21 4216807 4221050 Lal4g0494 4 3538890 3542165 LSH