Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal21g0569 | ATGGATTTGGACAGCATTGAGTGTGTATCATCCTCTGATGGCATGGATGAGGATGAGATCCATCTTCACCATCAACAATCTGAATTTTCTTCCACAAAACCTCGCAATGGAGCCACCAATCACAATAATTCTACGGTTCCAACAGCCATTGCTCCTGCAACCAGCGTCCATGAATTGCTTGAATGCCCTGTTTGTACCAATTCAATGTACCCTCCAATTCATCAGTGTCATAATGGCCACACGCTGTGTTCCACTTGTAAAACAAGGGTGCACAACCGATGTCCCACTTGCAGACAAGAACTCGGAGATATTAGGTGCCTGGCACTGGAGAAGGTTGCTGAATCACTCGAGTTACCTTGCAAGTTCTACTCTCTTGGATGTCCGGAAATCTTTCCGTACTACAGCAAGCTTAAGCATGAGACATTATGCGATTTTAGGCCTTACAGTTGTCCTTATGCAGGATCAGAGTGTTCTATTGTAGGGGATATTCCCTTCCTTGTTGCACATTTGAGGGATGATCATAAGGTGGACATGCACACAGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCTCGTGAAGTAGAGAACGCGACCTGGATGCTCACAGTATTCCATTGTTTTGGCCAATACTTCTGCCTTCATTTTGAAGCTTTCCAGATTGGCACGGCCCCTGTTTACATGGGATTCCTTCGTTTCATGGGCGATGAGAATGAGGCTCGGAACTACAGCTATAGCCTAGAAGTCGGGGGCAATGGTAGGAAACTCATATGGGAGGGTATGCCACGAAGTGTTCGTGATAGCCACCGTAAAGTCAGGGATAGCCATGATGGCCTCATTATTCAACGAAGTATGGCCTTGTTTTTTTCCGGTGGGGACAGGAAGGAGCTGAAACTCCGAATCACGGGAAGAATATGGAAGGAACAGCAGAATGCAGATGCTAGGGTGTCCATACCAAATCTTTGA | 969 | 0.4613 | MDLDSIECVSSSDGMDEDEIHLHHQQSEFSSTKPRNGATNHNNSTVPTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKFYSLGCPEIFPYYSKLKHETLCDFRPYSCPYAGSECSIVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQIGTAPVYMGFLRFMGDENEARNYSYSLEVGGNGRKLIWEGMPRSVRDSHRKVRDSHDGLIIQRSMALFFSGGDRKELKLRITGRIWKEQQNADARVSIPNL | 322 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal21g0569 | 322 | CDD | RING-HC_SIAHs | 60 | 98 | - | - | |
Lal21g0569 | 322 | SUPERFAMILY | TRAF domain-like | 115 | 307 | - | - | |
Lal21g0569 | 322 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 169 | 303 | IPR008974 | GO:0005515 | |
Lal21g0569 | 322 | SUPERFAMILY | RING/U-box | 56 | 102 | - | - | |
Lal21g0569 | 322 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 13 | 114 | IPR013083 | - | |
Lal21g0569 | 322 | Pfam | Seven in absentia protein family | 104 | 303 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Lal21g0569 | 322 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 115 | 168 | IPR013083 | - | |
Lal21g0569 | 322 | ProSiteProfiles | Zinc finger RING-type profile. | 62 | 98 | IPR001841 | - | |
Lal21g0569 | 322 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 1 | 315 | - | - | |
Lal21g0569 | 322 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE | 1 | 315 | - | - | |
Lal21g0569 | 322 | CDD | Sina | 176 | 304 | - | - | |
Lal21g0569 | 322 | ProSiteProfiles | Zinc finger SIAH-type profile. | 115 | 175 | IPR013010 | GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal21g0569 | Lal-Chr21 | 4216807 | 4221050 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal21g0569 | 10 | 310 | C3H Transcription Factor Family | AT2G41980 | 70.100 | 1.08e-160 | 449 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal22g0575 | 22 | 3938584 | 3941696 | Lal21g0569 | 21 | 4216807 | 4221050 | ECH | |
Lal21g0569 | 21 | 4216807 | 4221050 | Lal21g0569 | 21 | 4216807 | 4221050 | ECH | |
Lal21g0569 | 21 | 4216807 | 4221050 | Lal4g0494 | 4 | 3538890 | 3542165 | LSH |