Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0566 ATGATTATCAAGCGGAATTTGAAATCCCAAATGCCAAGTGTGAAACGGTGCAAACTAATGGACCCGGTTGGTGAAAAAAACGAGTGTTCTTATGCTCGTAAGAAGAGGAAGAAAATGAGTAACGATTACTACCCTTTGAACCTTCTCGGCGACATCGCCTCCGGTGAAATTCCGGTGAGCTTTCACGGCCTGCTGACCGAGAAAGGGTTCTCTGCTTCATGGTGCACCGAAGTTTCGTGCTCCCCACCCTGTGAAGTGGATTCGAATTCGAACGGTGGTGGCAGTGGTGGTGGTGCTACAAAGAACCAAGGCGGCGAGGTTCAGCGCCCACCTCTGGTTAGGACCTCAAGAGGGAGGGTTCAGGTGCTGCCATCGCGGTTCAATGATTCTATTATTGATAATTGGAGAAAGGACAGCAAGAGCAGCTTGCATGATTGTGAAATTGATGATGACTTTGAACCCAAGAGAGGGAAATTAGGTTCCAAAGCTCCGAAAAGTTGCAACCAGAATGCAAAAAAAGGGCGAAAGGATGAGAAAATCAGTTACAAGCCTCAAAAGTATCCAGCATTGTGTGAGGGGAAGGCGAGGAAAGATGTCGGTACGAGGTTTAGGAGTTTTGATGTGAGAGGGAGGTTTTTGGAGATGGAAGGAGTTGAGTCAATGGGAAACAAGAGTGCTTCGAAGGAGAATAGGGAGAGGAAAGATGGGTTATATGGGCCAGAAGATTTTTATGCAGGTGATATAGTGTGGGCTAAAGCAAGGAGAAGGGAACCTTTTTGGCCAGCCATTGTGATTGATCCTATGTCTCAGGCACCTGAACTGGTCATAAGGTCTTGTGTAGCTGATGCAGCTTGTGTAATGTTTCTTGGGTTTGCAGGGAATAAAAATCAAAGAGACTATGGATGGGTCAGGGATGGGATGATTTTTCCATTTATGGATTATGTAGACAGGTTTCAGGGGCAAACTGAATTAAGTTACTATAACCCCTCTCAATTCCAAGTGGCAATAGAAGAGGCATATTTGGCAGACCAGGGCCACACAGAGAAGTTGTTAGCAGATATAAATTCAGCAGCTGCTAACACTGATATTGATGATACTATTCTGAAAGTCCTTCAGGAGGACACTGGTCTAAATCGGTATGCAAGATATCACTTTCTGAACCAGTTAAGGGAAGCTGATAATACAAACTTAGTGTTAGCAACTGGAAAGGAATTATTTGATAAGGACACGCAACCATGTGAAGCCTGTGGGTCGGCCCTTAATTTCAAAATGTCCAAGAAACTAAAGGATTCAACTCCTGGTGGCCAATTCCTATGTAAAACATGTGCTAGGTTAACAAAATCAAATCACTATTGTGGCATATGCAAGAAAGTTTGGAATCATTCAGATAGCGGCAGCTGGGTTCGCTGTGATGGGTGTAAAGTCTGGGTGCACGCAGAATGTGACAAAATTCCCAGGAGCATTTTCAAGAACCTTGAAGGCACTGAATATTTCTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAATTACGGTCAAAAACCAAGTGTAACAAAAACCATGGGCAGCTAGTGCTTCCAAATAAGGTCACTGTTCTCTGCAATGGTGTAGAAGGCATATATTTTCCAAGCCTTCACTTAGTTGTGTGCAAGTGTGACTTTTGTGGGACTGAAAAGCAAGCACTTAGCGATTGGGAAAAACACACAGGTTCCAAATTAAGGAATTGGAAGACAACTATTAGGGTGAAGGACTCCATGCTACCATTGGAACAATGGATGCTGCGGTTGGCAGAATCTCATGCTAAGGCTGTAGTTACTGCCAAACCTAGGAAACCTTCTCTAAAAGAAAGGAAGCAGAAGTTGCTTACTTTCTTGCGAGAGAAATATGAACCTGTTAATGCTAAGTGGACTACAGAACGTTGTGCTGTATGTAGATGGGTTGAAGACTGGGATTACAACAAAATTATCATTTGCAACAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTTAAAGACTTTACATCTTGGGTTTGCAAGGCTTGTGAAACACCTCACATCAAGCGGGAGTGTTGTCTTTGTCCTGTGAAAGGTGGTGCACTAAAGCCAACCGATATTGACGCATTATGGGTTCATGTAACGTGTGCTTGGTTTCGACCGGAAGTCTCTTTTCCTAGTGGTGAGAAGATGGAGCCTGCTTTGGGTATTCTCAGTATTCCATCAAATTCTTTTGTGAAGGTGAGATTTGTGTTATCTGTAAACAAATCCATGGTTCATGTACACAATGTTGCAAGTGTTCGACTTATTTTCATACCATGTGTGCATCGAGAGCTGGATATCGGATGGAGATGCATTGTTCAGAGAAAAATGGTAGGCAAACAACAAAATGGGTTTCTTATTGTGCTTATCACAGGGTTTTTCCCCCAACACCTCATAATCTTTCTGGCTCCCAATCCCGACAATGTCTTGATTATGCAAACCCCTAATGGCGTCATTTCAACTAAAAGCCTTCTTAAAAATAAGAAAAAGGCTAGATCAAGGTTGATTGCATCAAATATAATGAAGCAAGATGACACTTCTCTTGTTGATAATGCTGAGGATGAGCCATTCACTGCCGCTAGGTGCCGTATTTTTCGGAGAACAAATCATACAAAGAAGAGAGAAGCAGATGAAGCCATTTTTCATCAAGTGAGGGGTCCCTACCATCATCCTTTAGATGCAATACAGAGATTAAACAAATACAGACATGTTGTAGAGGAACCCGAGGGATTTTCTTCTTTCAGAGAGCGCCTTCGTCACTTACAGAAAACCGAAAATGAACGTGTTTGCTTTGGTAGATCAGGCATACATGGATGGGGCCTCTTTGCACGTAGAGATATTCAAGAAGGAGATATGGTTCTTGAATATCGCGGTGAACAAGTGAGGAGTAGCATTGCAGATCTACGGGAAGCGCGCTATAGATTAGAAGGCAAAGACTGTTATCTGTTTAAGATAAGCGAAGAAGTGGTGGTAGATGCTACTGATAAAGGAAATATAGCACGGCTGATTAATCATTCTTGCATGCCGAATTGCTATGCGCGGATCATGAGTGTGGGCGACGATGAGAGCCGGATTGTACTCATTGCGAAGACCAACGTCCCCGCTGGTGATGAGTTGACGTATGACTACTTATTTGATCCTGATGAACCAGATGAATCAAAAGTACTTTGTTTGTGTAAAGCTCCAAACTGCAGGAAATTCATGAATTAG 3276 0.4286 MIIKRNLKSQMPSVKRCKLMDPVGEKNECSYARKKRKKMSNDYYPLNLLGDIASGEIPVSFHGLLTEKGFSASWCTEVSCSPPCEVDSNSNGGGSGGGATKNQGGEVQRPPLVRTSRGRVQVLPSRFNDSIIDNWRKDSKSSLHDCEIDDDFEPKRGKLGSKAPKSCNQNAKKGRKDEKISYKPQKYPALCEGKARKDVGTRFRSFDVRGRFLEMEGVESMGNKSASKENRERKDGLYGPEDFYAGDIVWAKARRREPFWPAIVIDPMSQAPELVIRSCVADAACVMFLGFAGNKNQRDYGWVRDGMIFPFMDYVDRFQGQTELSYYNPSQFQVAIEEAYLADQGHTEKLLADINSAAANTDIDDTILKVLQEDTGLNRYARYHFLNQLREADNTNLVLATGKELFDKDTQPCEACGSALNFKMSKKLKDSTPGGQFLCKTCARLTKSNHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKIPRSIFKNLEGTEYFCPTCKAKFDFELSDSEKLRSKTKCNKNHGQLVLPNKVTVLCNGVEGIYFPSLHLVVCKCDFCGTEKQALSDWEKHTGSKLRNWKTTIRVKDSMLPLEQWMLRLAESHAKAVVTAKPRKPSLKERKQKLLTFLREKYEPVNAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVKDFTSWVCKACETPHIKRECCLCPVKGGALKPTDIDALWVHVTCAWFRPEVSFPSGEKMEPALGILSIPSNSFVKVRFVLSVNKSMVHVHNVASVRLIFIPCVHRELDIGWRCIVQRKMVGKQQNGFLIVLITGFFPQHLIIFLAPNPDNVLIMQTPNGVISTKSLLKNKKKARSRLIASNIMKQDDTSLVDNAEDEPFTAARCRIFRRTNHTKKREADEAIFHQVRGPYHHPLDAIQRLNKYRHVVEEPEGFSSFRERLRHLQKTENERVCFGRSGIHGWGLFARRDIQEGDMVLEYRGEQVRSSIADLREARYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTNVPAGDELTYDYLFDPDEPDESKVLCLCKAPNCRKFMN 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0566 1091 SUPERFAMILY FYVE/PHD zinc finger 644 708 IPR011011 -
Lal21g0566 1091 Pfam SET domain 960 1065 IPR001214 GO:0005515
Lal21g0566 1091 SMART set_7 949 1072 IPR001214 GO:0005515
Lal21g0566 1091 ProSiteProfiles Zinc finger PHD-type profile. 449 505 IPR019787 -
Lal21g0566 1091 MobiDBLite consensus disorder prediction 86 102 - -
Lal21g0566 1091 ProSiteProfiles PWWP domain profile. 245 314 IPR000313 -
Lal21g0566 1091 SMART PHD_3 451 503 IPR001965 -
Lal21g0566 1091 SMART PHD_3 645 692 IPR001965 -
Lal21g0566 1091 CDD SET_SETD1-like 936 1087 - -
Lal21g0566 1091 Pfam PWWP domain 246 339 IPR000313 -
Lal21g0566 1091 SUPERFAMILY SET domain 941 1088 IPR046341 -
Lal21g0566 1091 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 445 507 IPR013083 -
Lal21g0566 1091 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1091 IPR025780 -
Lal21g0566 1091 ProSiteProfiles Extended PHD (ePHD) domain profile. 697 756 IPR034732 -
Lal21g0566 1091 MobiDBLite consensus disorder prediction 153 179 - -
Lal21g0566 1091 CDD PHD_TCF19_like 452 502 - -
Lal21g0566 1091 CDD PHD_ATX3_4_5_like 645 691 IPR042011 -
Lal21g0566 1091 ProSiteProfiles Post-SET domain profile. 1075 1091 IPR003616 -
Lal21g0566 1091 SUPERFAMILY Tudor/PWWP/MBT 238 347 - -
Lal21g0566 1091 SMART PostSET_3 1075 1091 IPR003616 -
Lal21g0566 1091 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1091 - -
Lal21g0566 1091 Pfam PHD-finger 451 504 IPR019787 -
Lal21g0566 1091 Pfam PHD-finger 658 692 - -
Lal21g0566 1091 ProSiteProfiles SET domain profile. 949 1066 IPR001214 GO:0005515
Lal21g0566 1091 ProSiteProfiles Zinc finger PHD-type profile. 643 694 IPR019787 -
Lal21g0566 1091 Pfam PHD-zinc-finger like domain 699 751 - -
Lal21g0566 1091 MobiDBLite consensus disorder prediction 86 119 - -
Lal21g0566 1091 ProSitePatterns Zinc finger PHD-type signature. 646 691 IPR019786 -
Lal21g0566 1091 SUPERFAMILY FYVE/PHD zinc finger 448 506 IPR011011 -
Lal21g0566 1091 PANTHER PHD FINGER PROTEINS 1 1091 - -
Lal21g0566 1091 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 632 695 IPR013083 -
Lal21g0566 1091 Gene3D SET domain 848 1091 IPR046341 -
Lal21g0566 1091 Gene3D - 240 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0566 Lal-Chr21 4175834 4185434 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0566 646 823 C2H2 Transcription Factor Family AT3G14740 32.065 1.38e-16 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal21g0566 SET 6.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0566 - - aprc:113853254 1600.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0560 17 3978626 3988908 Lal21g0566 21 4175834 4185434 LSH
Lal21g0566 21 4175834 4185434 Lal4g0487 4 3475611 3485583 LSH