Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0557 ATGGGTCGTAAGAAGATTGAGATTAAGATGTTGGAGGACTCAAACACAAGGCAAGTTACTTTTTCCAAACGTAAAACAGGCCTATTCAAGAAAGCATATGAGTTATCTATATTGTGTGGAAGTGAAGTTGCTATTGTTGTGTTTTCTCCTGGGAAGAAACCCTATTCTTTTGGGCACCCAGATATTAATACTGTTGCTACCAAATTTCTTCAACAAGAGTCAAACTCAAATAGTGCCCTATGTAGCTCATCTTCCAAAGATTCTAACTTGGTTAGGTTGAACCAACTTGGTGAAGTGATGGACCAATTATATGAGGAAGAAAAGAGAGGTGCAATCCTTGATGTGGCTCTACATCAACACAAGAAAACTCAACTTGACAAGGTAAAACAATTGCATCATTTAGCAGAGTTAAGGTGTAAATTAAAGGCACGTATTGATGAGATAGAAGTAGCCGAAACTATGTTAAAGATTAAAGAGCAACCTGTGGTATTCTGTAAAAATCATGCCTAA 510 0.3706 MGRKKIEIKMLEDSNTRQVTFSKRKTGLFKKAYELSILCGSEVAIVVFSPGKKPYSFGHPDINTVATKFLQQESNSNSALCSSSSKDSNLVRLNQLGEVMDQLYEEEKRGAILDVALHQHKKTQLDKVKQLHHLAELRCKLKARIDEIEVAETMLKIKEQPVVFCKNHA 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0557 169 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Lal21g0557 169 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Lal21g0557 169 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal21g0557 169 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal21g0557 169 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal21g0557 169 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal21g0557 169 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Lal21g0557 169 PANTHER MADS BOX PROTEIN 2 167 - -
Lal21g0557 169 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 167 - -
Lal21g0557 169 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal21g0557 169 Gene3D - 14 87 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0557 Lal-Chr21 4102698 4103207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0557 1 106 Type I MADS-box Gene Family AT2G34440 50.467 6.63e-33 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal21g0557 SRF-TF 3.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0557 - - lang:109342374 273.478