Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0555 ATGGACAACATGGGAGATTCACCAAATAACCTCGTAGATGAGTTGCTAGAAGGTTTGGAGTTTGCAAGACAGCTCCAAATGAATCTTCACATGCCTTCTTCTTCCCAAGAAACCAGTTACATGTTGATCCAGAAGATTATATTAGCATTTGAAAAGGCACTTCAAATGGTAAATTTGAAAGGAGGACCATTGATTGAGTCATCATCTCCACTTTTGAGTTGCAGTCCCCAAAGTGAAGGCTCTGACAGAGATTTCAGGGACCAAGATCACAATGCTTCAAGAAAGAGAAAGACTTTGCCAATATGGACAAAAATAATTCAAGTCAACCCAAGAATGGGAGTGGAAGGGCCTCTTGATGATGGATACAGTTGGAGAAAATATGGGCAGAAGGACATTCTTGGAGCCGTGTATCCTAGGGGCTATTATAAGTGCATACACAGAAATGTTCGAGGTTGCTTGGCCACAAAACAGGTGCAAAGATCTGATGAAGATACAACAATCTTCGAAATCACTTATAGGGGAATGCATACATGCACAATGGCCTCTAATACAGTTCCTATATCTACTACAAATGAAAATCAAGAATCAAATTTGGACACAATTCCTCATCAACAAATTAATATCCTACAAAGTCTTGAGCATCAACCAAATCCAAATGAACTATTATTGAACCTCAGGGAAGGTCTAAGAGTCCAAACAGAAAACTTAGATTCTTCCCTTCATGACCAATCATTTGGTTCATTCTATTTCCCTTCAACTTCAAACATCAAAACTGAAAATCAAATTTTTCCATCCCCTATGCTTGAAAACTTTACTTCCCCTTCATATATAACCCCTACCACTTCAGGAATAAGCCACTTTTCAGTTTCTCAAAGTATGACAAGTTCTGAGTTTCAGATCAATGACATGAATTTAGCTGCTACTTCAGCTGCAAACTCATCAACCATTGGATTAGAGTGTCCATTTGACCAGTTTCAATTTGATGGTCATGACTTCACATTTGATAACCCACGATTTTTCTAG 1023 0.3842 MDNMGDSPNNLVDELLEGLEFARQLQMNLHMPSSSQETSYMLIQKIILAFEKALQMVNLKGGPLIESSSPLLSCSPQSEGSDRDFRDQDHNASRKRKTLPIWTKIIQVNPRMGVEGPLDDGYSWRKYGQKDILGAVYPRGYYKCIHRNVRGCLATKQVQRSDEDTTIFEITYRGMHTCTMASNTVPISTTNENQESNLDTIPHQQINILQSLEHQPNPNELLLNLREGLRVQTENLDSSLHDQSFGSFYFPSTSNIKTENQIFPSPMLENFTSPSYITPTTSGISHFSVSQSMTSSEFQINDMNLAATSAANSSTIGLECPFDQFQFDGHDFTFDNPRFF 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0555 340 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED 1 338 - -
Lal21g0555 340 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 338 IPR044810 GO:0003700
Lal21g0555 340 Gene3D WRKY domain 106 181 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal21g0555 340 Pfam WRKY DNA -binding domain 119 178 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal21g0555 340 SMART WRKY_cls 118 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal21g0555 340 MobiDBLite consensus disorder prediction 70 93 - -
Lal21g0555 340 ProSiteProfiles WRKY domain profile. 113 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal21g0555 340 SUPERFAMILY WRKY DNA-binding domain 116 180 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0555 Lal-Chr21 4090507 4092128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0555 9 237 WRKY Transcription Factor Family AT4G23810 35.338 2.47e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal21g0555 WRKY 7.1e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0654 17 4646246 4651213 Lal21g0555 21 4090507 4092128 LSH
Lal21g0555 21 4090507 4092128 Lal4g0469 4 3303151 3305538 LSH