Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0553 ATGGAACAGAGTATCCTAAGCAAATACACTATCCATCACAGTGTTACCAAGAAGATTTCAAACCCAAAAAAGGGTTCTTGTAGCAATAACACAGAACCCATAGTACCAAGAGTGGTTCGTATATCAGTCACTGATCCAGACGCTACTGATTCTTCCAGCGACGAAGAAGGTTTGTGCCAAAATAGGAAAAGAATGAAGCGCTATGTCAACCATATTGACATTGAAACCGTCACCAAAAAACCTGTTTCCGCCGTAAAGAAACAAGCTTCTGGCCGCACCACCGTTCGACGGCCTCCGGCGAAGACTTTTTCCGGCGTCAACGGTGGGAGAAAGTTCCGTGGTGTGAGGCAACGACCTTGGGGAAAATGGGCTGCAGAGATTCGAGACCCTTTGAGAAGAGTGAGGATCTGGTTAGGAACATATGAAACTGCTGAAGAAGCTGCTATGGTTTACGATAATGCTGCCATTAAGTTTCGTGGCCCTGATGCTTTAACGAATTTCGTTACACCACCGTCGAAGGAAGCCACTGCGGTTGTCACCGACGTGGTGAAACCGGAAACAAAGGTTGTTGTTAATGCTGAAGCTTCTGATTCTAGTTATGATTCCGGTGATGATCAATGTGTGAATCTTTCTTCTCCTACTTCTGTTCTTCAATTCAGAAGCAATAATGAAGAGGTAATGAAATCTCAAAAATCTATTCAAACAGAAAATTTGTTAGTGGAAGATGGTTTCAGAGAGTGTGAAGGTGAGACAAGTTTTTTTGATGAAATAAGCTTATTTGATGAAACTGGTGAATTTTTTCAACGTCAAATGCCTGTTTGGGACCAAGTTTTTGATCTTGAAACACCACAATACCTTGATGATGTTGTTCTTTTCGAAGAAGAAGAACAACAACAACAGCCACTAATGATGGGTGAAACGACACCGTTTTTGTCGGAAGATGATTTTTGTGACAACCTTGTTGATGAGTTTTTTGATTTTGACAAAGCATGTTCTCAACCATCAAGTTTATGCCAAGTGGAAGATTATTTTCAAGATATTTTGTCATCCTCAGAACAACTCGTGGTTCTATGA 1074 0.4125 MEQSILSKYTIHHSVTKKISNPKKGSCSNNTEPIVPRVVRISVTDPDATDSSSDEEGLCQNRKRMKRYVNHIDIETVTKKPVSAVKKQASGRTTVRRPPAKTFSGVNGGRKFRGVRQRPWGKWAAEIRDPLRRVRIWLGTYETAEEAAMVYDNAAIKFRGPDALTNFVTPPSKEATAVVTDVVKPETKVVVNAEASDSSYDSGDDQCVNLSSPTSVLQFRSNNEEVMKSQKSIQTENLLVEDGFRECEGETSFFDEISLFDETGEFFQRQMPVWDQVFDLETPQYLDDVVLFEEEEQQQQPLMMGETTPFLSEDDFCDNLVDEFFDFDKACSQPSSLCQVEDYFQDILSSSEQLVVL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0553 357 CDD AP2 111 167 IPR001471 GO:0003700|GO:0006355
Lal21g0553 357 Pfam AP2 domain 111 160 IPR001471 GO:0003700|GO:0006355
Lal21g0553 357 SUPERFAMILY DNA-binding domain 111 168 IPR016177 GO:0003677
Lal21g0553 357 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 6 351 - -
Lal21g0553 357 ProSiteProfiles AP2/ERF domain profile. 111 168 IPR001471 GO:0003700|GO:0006355
Lal21g0553 357 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 351 - -
Lal21g0553 357 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Lal21g0553 357 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Lal21g0553 357 SMART rav1_2 111 174 IPR001471 GO:0003700|GO:0006355
Lal21g0553 357 MobiDBLite consensus disorder prediction 83 110 - -
Lal21g0553 357 Gene3D AP2/ERF domain 110 169 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0553 Lal-Chr21 4059380 4060453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0553 8 293 AP2-EREBP Transcription Factor Family AT4G27950 41.424 3.92e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal21g0553 AP2 9.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0553 - - lang:109327510 481.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0536 17 3748216 3749310 Lal21g0553 21 4059380 4060453 LSH