Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0545 ATGGGAAGGTGTTGGTTTCTTGAGTTGTTAGTTGTAGGAACCTATGTTTGGTTGGTTATTAATAATGTTGGGGTTGAAGGGTACCCTACAGAGGATCTAGTGAAGAGGTTACCTGGGCAACCCAAAGTTGAGTTCAAACAATATGCAGGGTATGTTGACATAGATGTTAAACATGGAAGAAGCTTGTTCTACTATTTTGTGGAAGCTGACCATGACCCTGATAATAAGGCACTAACCCTTTGGCTCAATGGAGGTCCAGGATGTTCATCCATTGGAGGAGGTGCCTTTACTGAATTGGGCCCCTTTTATCCTAAAGGCAATGGACGTGGTCTCAGAAAAAATTCAATGTCTTGGAATAGAGCATCCAACCTTCTCTTTATCGAATCTCCTGCTGGAGTTGGTTGGTCATACTCAAATACAACTTCAGATTATAACACTGGTGATGTATCCACAGCCAATGATATGGTTTTGTTCTTCCTGAAATGGTATGAGAAGTTTCCATCCTATAGATCAAGGGAACTGTTCCTTACTGGAGAAAGCTATGCAGGACATTACATACCACAATTAGCTAATGCTATTCTGGACTACAATGCTCATTCAACTGATTTCAAATTCAATATCAAAGGAATTGCTATTGGAAACCCACTTCTAAAACTTGACCGTGATACACAAGCAACATATGAATATTTCTGGTCACATGGAATGGTTTCTGATGAAATTGGCATTGCCATTATGAATAATTGTGATTTTGATGATTATGTCTTTGAAGATCCTCACAATATATCTAAATCATGCAATGATGTCATAAATGAAGCAAATGAAATTGTTGGTGAATATATAAACAACTATGATGTGATTCTGGATGTTTGTTATCCATCCATAGTTGAACAAGAACTGAGATTGAAAAAAATGGCTACTAAAATAAGTGTAGGGGTAGATGTGTGTATGACTTTTGAAAGAAGATTTTACTTAAACACCCCTGAGGTCCAAAAAGCTCTTCATGCAAACAGAACAAATCTTCCTTATCCCTGGTCCATGTGTAGTGGTGTTTTAAACTATAACGAAACTGATCCTAACATCAATATTCTTCCAATTCTGAAAAGGATAGTTGAAAATCATATTCCAGTATGGGTTTTCAGTGGAGACCAAGATTCGGTAGTGCCATTAATGGGTTCTCGAACACTGATTCGTGAACTAGCTCATGACCTCAAGTTGAAGGTTACAGTCCCATATGGAGCTTGGTTCCACAAAGGCCAGGTTGGAGGTTGGGTAACAGAGTATGGAAATTTATTGACTTTTGCAACTGTAAGAGGAGCTGCTCACATGGTACCTTATGCACAACCTTCAAGAGCACTTCATCTATTCACTTCTTTTCTGCATCGAAGGAGGTTGCCAAATTCAACTAACTTTCAATAA 1416 0.3842 MGRCWFLELLVVGTYVWLVINNVGVEGYPTEDLVKRLPGQPKVEFKQYAGYVDIDVKHGRSLFYYFVEADHDPDNKALTLWLNGGPGCSSIGGGAFTELGPFYPKGNGRGLRKNSMSWNRASNLLFIESPAGVGWSYSNTTSDYNTGDVSTANDMVLFFLKWYEKFPSYRSRELFLTGESYAGHYIPQLANAILDYNAHSTDFKFNIKGIAIGNPLLKLDRDTQATYEYFWSHGMVSDEIGIAIMNNCDFDDYVFEDPHNISKSCNDVINEANEIVGEYINNYDVILDVCYPSIVEQELRLKKMATKISVGVDVCMTFERRFYLNTPEVQKALHANRTNLPYPWSMCSGVLNYNETDPNINILPILKRIVENHIPVWVFSGDQDSVVPLMGSRTLIRELAHDLKLKVTVPYGAWFHKGQVGGWVTEYGNLLTFATVRGAAHMVPYAQPSRALHLFTSFLHRRRLPNSTNFQ 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0545 471 Gene3D - 362 460 - -
Lal21g0545 471 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 9 467 IPR001563 GO:0004185|GO:0006508
Lal21g0545 471 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185
Lal21g0545 471 PANTHER CARBOXYPEPTIDASE 9 467 - -
Lal21g0545 471 Gene3D - 315 351 - -
Lal21g0545 471 Gene3D alpha/beta hydrolase 29 291 IPR029058 -
Lal21g0545 471 Pfam Serine carboxypeptidase 39 460 IPR001563 GO:0004185|GO:0006508
Lal21g0545 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185|GO:0006508
Lal21g0545 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185|GO:0006508
Lal21g0545 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
Lal21g0545 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 431 444 IPR001563 GO:0004185|GO:0006508
Lal21g0545 471 SUPERFAMILY alpha/beta-Hydrolases 34 464 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0545 Lal-Chr21 3972804 3977500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0545 321 459 Calmodulin-binding Proteins AT2G22960 23.741 5.77e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0545 K16297 - gmx:100803335 841.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0545 21 3972804 3977500 Lal21g0545 21 3972804 3977500 ECH
Lal17g0525 17 3651873 3655579 Lal21g0545 21 3972804 3977500 LSH