Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0543 ATGTCTAGCACAGCTGGTGAGGTCATCAAATGCAAAGCTGCTATTGCATGGGAGGCAGGGAAGCCATTGGTGATTGAAGAAGTAGAGGTGGCACCACCACAGGCTGGTGAAGTGCGTTTGAAGATTCTCTTCACCTCTCTTTGCCACACTGATGTTTACTTCTGGGAAGCTAAGGGCCAGACTCCATTGTTTCCTCGTATATTTGGTCATGAAGCTGGAGGGATTGTGGAGAGTGTAGGAGAGGGTGTGACTCATCTGAAACCAGGGGACCATGCTCTTCCTGTGTTCACTGGCGAGTGTGGCGAATGCCGACATTGCAAATCAGAAGAGAGCAACATGTGTGATCTTCTTAGGATCAACACTGATAGAGGTGTCATGCTCAATGATGGAAAGTCAAGGTTCACTATTAAGGGAGAACCTGTGTATCACTTTATAGGAACCTCTACATTCAGTGAATACACTGTGGTTCATGCTGGATGTGTTGCAAAGATCAACCCTGAAGCCCCACTTGACAAAGTTTGTGTTCTCAGCTGTGGAATTTGCACAGGTCTTGGTGCTACTATCAATGTTGCTAAACCAAAACCTGGTTCCTCTGTTGCAATTTTTGGTCTTGGAGCTGTTGGTCTTGCTGCTGCTGAAGGGGCCAGAATTTCTGGTGCAAAAAGAATCATTGGGGTTGATTTAGTTGCATCTAGATTTGAGCTAGCCAAGAAATTTGGGGTTAATGAGTTTGTGAACCCAAAAGATCATAGCAAACCTGTTCAAGAGGTGATTGCTGAAATGACCGATGGAGGTGTCGATCGTGCTGTTGAATGTACCGGAAATGTCCAAGCTATGATCTCAGCATTTGAATGTGTTCATGATGGTTGGGGTGTTGCTGTACTTGTTGGAGTACCAAACAAAGATGCTGCATTCCAAACTCATCCTGTGAATTTCTTGAATGAGAGGACTCTTAAGGGTACCTTCTACGGTAACTACAAGCCCCGAACCGATCTTCCTAAGGTTGTGGAGCAGTATATGGAAGGGGGGCTGGAACTTGAGAAGTTCATCACTCACACAGTTCCATTCGCAGAGATTAACAAAGCTTTTGATTTGATGCTGAATGGAGAGGCCATCAGATGCATCATCCGCATGGAAGACTAA 1143 0.4541 MSSTAGEVIKCKAAIAWEAGKPLVIEEVEVAPPQAGEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECRHCKSEESNMCDLLRINTDRGVMLNDGKSRFTIKGEPVYHFIGTSTFSEYTVVHAGCVAKINPEAPLDKVCVLSCGICTGLGATINVAKPKPGSSVAIFGLGAVGLAAAEGARISGAKRIIGVDLVASRFELAKKFGVNEFVNPKDHSKPVQEVIAEMTDGGVDRAVECTGNVQAMISAFECVHDGWGVAVLVGVPNKDAAFQTHPVNFLNERTLKGTFYGNYKPRTDLPKVVEQYMEGGLELEKFITHTVPFAEINKAFDLMLNGEAIRCIIRMED 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0543 380 SUPERFAMILY GroES-like 328 377 IPR011032 -
Lal21g0543 380 CDD alcohol_DH_plants 9 377 - -
Lal21g0543 380 SUPERFAMILY GroES-like 4 186 IPR011032 -
Lal21g0543 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Lal21g0543 380 Pfam Zinc-binding dehydrogenase 206 335 IPR013149 -
Lal21g0543 380 Gene3D - 19 370 - -
Lal21g0543 380 Gene3D - 183 321 - -
Lal21g0543 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 342 IPR036291 -
Lal21g0543 380 PANTHER ALCOHOL DEHYDROGENASE 4 378 - -
Lal21g0543 380 PANTHER ALCOHOL DEHYDROGENASE-RELATED 4 378 - -
Lal21g0543 380 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0543 Lal-Chr21 3967986 3971435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0543 37 332 Monolignol Biosynthesis Gene Families AT4G37990 25.168 7.61e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0543 K18857 - gmx:100783858 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0543 21 3967986 3971435 Lal21g0543 21 3967986 3971435 ECH