Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0538 ATGGTGGATTCTTCTTCAGCTGTTGAGGACACCAAGACTTGTAGTCCACGTGGTCATTGGAGACCAGCTGAGGATGAAAAACTCACGCAACTTGTTCAACAATTTGGTGCCCAGAATTGGAATTCAATTTCTGATAAGCTACAAGGAAGATCAGGGAAAAGTTGCAGATTAAGGTGGTTCAATCAGCTAGACCCAAGAATTAACAGAAGGCCATTCACAGAAGAGGAAGAAGAGAGATTAATAGCAGCACATAGAAATAATGGGAACAAGTGGGCACTAATATCAAGGCTTTTCCCTGGTAGAACTGATAATGCAGTGAAGAATCATTGGCATGTTATAATGGCTAGAAGGCAAAGAGAACAACAATCTAAGTTATGTGGAAAGAGAAGTTTCCAAGAACTATACAATGATTCCAACAATAATAATATCTTCCCTGAATTAAGAACCTCAAGAATTGGATTAGAGAATGCAACATTCTTTGACTTTAAGAAGAACCTTGATAATACTCTCTCTAGTTCTATAGCAACTTGGAATTTTGCATCATCTGTGACAATTGCAACCACCACAAACACTAGCAATACTACAACTACTACTCTTGTAGCTGATTCATTTAGAAAAGGAGGGAAACATATTTATTTCAATAGTTCTAGTGTTTATCTCCCAGAATATTGTTCAAAAAACTCAGATAGGTTTCTTTACAGAATATATCCAAATCATACTGCTACAACTAAATCCTTTGGTAGCTTTAGAAGCACTAATAATTCCACTAATTCATTCTCTTTTCCAAACTACAAGAGGGTTGTTCCAAGTCCCTTTGGATCCCTTGGTTCTTCTGATAACAATGGAAGGTTAAAGAGTTTCTGTGATGACTACTCATCCACATTCACAGAGTTGAAGGCTTCTTCAGAAAAAGAACAAGAAGATGATGAGCCAAATATTGAGCACAAAGAAGTTCCTTTCATTGATTTTCTTGGTGTTGGTGTCTCTTCATCATAA 996 0.3685 MVDSSSAVEDTKTCSPRGHWRPAEDEKLTQLVQQFGAQNWNSISDKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLIAAHRNNGNKWALISRLFPGRTDNAVKNHWHVIMARRQREQQSKLCGKRSFQELYNDSNNNNIFPELRTSRIGLENATFFDFKKNLDNTLSSSIATWNFASSVTIATTTNTSNTTTTTLVADSFRKGGKHIYFNSSSVYLPEYCSKNSDRFLYRIYPNHTATTKSFGSFRSTNNSTNSFSFPNYKRVVPSPFGSLGSSDNNGRLKSFCDDYSSTFTELKASSEKEQEDDEPNIEHKEVPFIDFLGVGVSSS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0538 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Lal21g0538 331 SUPERFAMILY Homeodomain-like 16 110 IPR009057 -
Lal21g0538 331 Pfam Myb-like DNA-binding domain 20 80 - -
Lal21g0538 331 PANTHER MYB PROTEIN-RELATED 6 329 - -
Lal21g0538 331 SMART sant 16 65 IPR001005 -
Lal21g0538 331 SMART sant 68 116 IPR001005 -
Lal21g0538 331 CDD SANT 20 61 IPR001005 -
Lal21g0538 331 CDD SANT 71 111 IPR001005 -
Lal21g0538 331 Gene3D - 17 68 - -
Lal21g0538 331 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Lal21g0538 331 MobiDBLite consensus disorder prediction 1 21 - -
Lal21g0538 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 63 IPR017930 -
Lal21g0538 331 PANTHER TRANSCRIPTION FACTOR MYB56 6 329 - -
Lal21g0538 331 Gene3D - 71 131 - -
Lal21g0538 331 ProSiteProfiles Myb-like domain profile. 17 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0538 Lal-Chr21 3915158 3917262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0538 11 164 MYB Transcription Factor Family AT1G69560 61.935 7.26e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal21g0538 Myb_DNA-bind_6 6.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0538 K09422 - gmx:100817328 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0538 21 3915158 3917262 Lal21g0538 21 3915158 3917262 ECH