Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0522 ATGGATGAAGAGGGAAAACAATCTTCTCACAAAACACCATACACTGAAATTGAGCAAGTTAACAAAGATTTCATTCTAGCAACTAGCTTGCAAGAACAAGAGGGAACCTTGTCAACACTAGCAACGATTGAAAGTGAAAGCGAAACCGATGAATATGTAAGCGACTCCTCTTTTGATGATGATGATGATTTTTCGGAAAGCCAAGAGTTCGAAGCCTTTCTTGAAGGTGAAGGAAGCAACTATGATGAAGAGATGGGAATGGAAGAAGAAGATGAGATTGACCCAGATGAATTATCTTATGAAGAATTACTTGAGTTAGGAGAGTTTATAGGAAAAGAGAAGAAAGGTTTATCTAAAAATGAAATCTCTTCATTCTTATACCCTTATACTTGTGAATCTGGTGCAAGTAAAAGTGGAATAGACAAGTGTGTGATTTGTCAAGTTGAATATGAAAAAGGTGAAGCCCTAGTGGCACTTCAATGTGACCACCCTTACCATGCAGATTGCATAACAAAGTGGCTTCAAGTTAAGAAGGTTTGTCCAATATGTAGCAATGAAGTTTCAGCTCCCAAAATGGTTTATAACAACAATGCATGA 597 0.3719 MDEEGKQSSHKTPYTEIEQVNKDFILATSLQEQEGTLSTLATIESESETDEYVSDSSFDDDDDFSESQEFEAFLEGEGSNYDEEMGMEEEDEIDPDELSYEELLELGEFIGKEKKGLSKNEISSFLYPYTCESGASKSGIDKCVICQVEYEKGEALVALQCDHPYHADCITKWLQVKKVCPICSNEVSAPKMVYNNNA 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0522 198 MobiDBLite consensus disorder prediction 44 65 - -
Lal21g0522 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 190 IPR013083 -
Lal21g0522 198 Pfam Ring finger domain 141 183 IPR001841 -
Lal21g0522 198 ProSiteProfiles Zinc finger RING-type profile. 143 184 IPR001841 -
Lal21g0522 198 MobiDBLite consensus disorder prediction 48 65 - -
Lal21g0522 198 SMART ring_2 143 183 IPR001841 -
Lal21g0522 198 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 2 192 - -
Lal21g0522 198 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 2 192 IPR045191 GO:0061630
Lal21g0522 198 SUPERFAMILY RING/U-box 142 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0522 Lal-Chr21 3770347 3770943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0522 90 187 C3H Transcription Factor Family AT3G63530 45.545 1.39e-27 102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0522 21 3770347 3770943 Lal21g0522 21 3770347 3770943 ECH
Lal17g0471 17 3236868 3237461 Lal21g0522 21 3770347 3770943 LSH