Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0515 ATGGTTAAGAAAGAGCTCAAAATCCACACAAAGCCATCATCAAAGGAAATTACATCTTTGTCCTCATCAACAGATAGCAGCAAGAAGAAGAAGTACAAGGGAGTTAGAATGAGAACTTGGGGTTCATGGGTATCAGAGATTAGAGCACCAAATCAGAAAACAAGAATATGGTTAGGTTCTTATTCAACAGCTGAAGCAGCAGCTAGAGCTTATGATGCTGCACTTTTATGCCTTAAAGGTTCTTCAGCAAATTTCAACTTTCCATTAACTTGTTCTAAGTATTATATTCCTCAAGATACTGTTTTGTCCCCTAAATCAATACAAAGAGTTGCTGCAGCTGCAGCTAATAGTTTCATTCATGAAAATGACATTATTGTAAATACTCCACTTTCCCTTGATCTTCATGCATCAACTTCTTCATCATCAGTGTCTTCTCCATCAATGGCTTCATCTCCCTTAGATCAAATCAATGATGATGTTTCATTAATGCCATGTTTTGAATATGATCAACAAGCAAATGGGTCAATGGCTTTGAATATGATGGAACCTTGGTACACCTTTGATGGCATTAGTCCCTTCTTTGATATTGATTCATCTCAGATAATTGATGATTTCTATGAAGAAAGTGATATTCGTTTGTGGAACTTCTGCTGA 654 0.3639 MVKKELKIHTKPSSKEITSLSSSTDSSKKKKYKGVRMRTWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANFNFPLTCSKYYIPQDTVLSPKSIQRVAAAAANSFIHENDIIVNTPLSLDLHASTSSSSVSSPSMASSPLDQINDDVSLMPCFEYDQQANGSMALNMMEPWYTFDGISPFFDIDSSQIIDDFYEESDIRLWNFC 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0515 217 MobiDBLite consensus disorder prediction 1 30 - -
Lal21g0515 217 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Lal21g0515 217 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Lal21g0515 217 Pfam AP2 domain 31 80 IPR001471 GO:0003700|GO:0006355
Lal21g0515 217 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677
Lal21g0515 217 CDD AP2 34 88 IPR001471 GO:0003700|GO:0006355
Lal21g0515 217 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 217 - -
Lal21g0515 217 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Lal21g0515 217 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Lal21g0515 217 Gene3D AP2/ERF domain 30 90 IPR036955 GO:0003700|GO:0006355
Lal21g0515 217 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF013 10 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0515 Lal-Chr21 3718287 3718940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0515 1 216 AP2-EREBP Transcription Factor Family AT1G21910 45.669 1.15e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal21g0515 AP2 4.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0515 - - gmx:100819512 241.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0515 21 3718287 3718940 Lal21g0515 21 3718287 3718940 ECH
Lal17g0462 17 3177012 3177668 Lal21g0515 21 3718287 3718940 LSH