Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0504 ATGCGGCGTCAATCATCAACAAACCCACCGCTTCCTCCGCCGTCTCGTCCGTCGCAACCTTCACCTATCAACGCCGCTATCTGGCGTGCCTGTGCCGGAGCTTCTGTTCAAACCCCAACCGTTAATTCTAGGGTTTACTATTTCCTTCAAGGTCATATTGATCAAGCTTCTTCTACTCCGACAAAACTATCACCTAATGTGTATTCCACACCCTACGTTCTTTGTCGAATTGTTGAGGTTCAATTTCTCGCTGATCATAACACTGACGAGGTTTTCACTAAACTCGTTCTTCAACCTATCGATCATAGTTCTGTTTCTGAGTTTCATTTCATTTCTCCGCTACCGGGTACTGACGATGAGAATAATGATGGTTCTGGTGATGGTGATGAAAACGCTGTCGTTCCGTTCGCTAAGATTCTGACGCCTTCTGATGCTAACAATGGTGGTGGTTTCTCTGTTCCGAGATACTGTGCTGATTCGATTTTCCCGCCGCTGAATTTCCAGAAGAATACGCCGTTTCAGAATCTGAAGATCAATGATGTCCATGAAAATGTGTTTGAGTTTCGCCACATTTTCCGTGGGACGCCGCGCCGCCACCTTCTCACTACCGGTTGGAGCAAGTTTGTTAACTTCAAGAACCTCGTGGCAGGGGATTCTGTTGTCTTCATGAAGAATTCGAAGGGTGAGATATTTGCTGGAGTTCGCCGTGCCAAGCAGTCTTCCTCGAGGGGATGTGGCGGTGGTGGAGGTGGCAGTGGCACTGACTGGTCCGCGATGATGATCAGTGTTGGTGGGGTGAGGAAAAGGGATGAGGAAGGGGAGAAGAAGAAGCAGGAGGTGAAGGTGGTGAAGGAAGGGTTTTCGAGGAATGGGAAGGGGAAATTGGCGCCTGAGAAGGTTGCTGAGGCGGCTGAATTGGCGGTGCAGGGAATGCCGTTTGAGGTTGTGTATTATCCGAGTCCTGGGTGGACTGATTTTGTGGTGAAGGCGGAGATTGTGGATGAAGTGAGGAGGGTTATGTGGAGCCCTGGAATGAGAGTGAAGATGGATGTGGAGACTGAGGATTCGTCTAGGGTGAGCTGCTTTCAGGGCACAGTGTCTGCTGTGTGTGTTCCTGAGAATGGACAGTGGCGTGGATCTCCTTGGCGCATGCTTCAGGTTGCATGGGATGAACCTGAAGTCTTGCAGAATTCAAAGTTGGTCAGTCCTTGGCAGGTTGAACTTGTGTCTGCCACACCTGCACTTCATCCAGCATTCACCCCAACTAAAAGGTTTAGAGCTGCTCAGGGTTCTTTGGTTTTACCTGATGGAGAGGGAGACCCCTTCTTTCCTATGACAGGATACTCTAATTCAACAATGGGACAGTTAAATCAGACATTGTCGAGTTATGGTACTTTTCCTGCGGGCATGCAGGGAGCCAGGCATGATTTTTTTTCTACACTTATTTTTTACAAATTTTCTGGTGATACGTCTCGTCAGTATTTGGGTAATTCCTCTGGGAACAACTCAGCACCAAGCTCGGCAACTTTGTCAACAGAGCTAAATATTGGTAGTTCTCAATCTGACAACTTGTCACCAGATAGCCAGGGTAGTTTGCATTCCTTTGGCATGGAATTTGCTGGGACCCACAGCTTCAACTCAATGAAACCTAGGTCTGCTTCAATTCAGCTATTTGGTATCACCATTGAAACAAAACAGCCCACTGAAAGTGTTTTGCATCTTCCTTCTTGCACGAAGCATGATAGCTGTAAGGGTTGCAGTGAAATTAAAGCCATGGACAAGCTGGAATTTTCTTTGGCTTACTCAAATGGTCGACAGGCTTAA 1824 0.4759 MRRQSSTNPPLPPPSRPSQPSPINAAIWRACAGASVQTPTVNSRVYYFLQGHIDQASSTPTKLSPNVYSTPYVLCRIVEVQFLADHNTDEVFTKLVLQPIDHSSVSEFHFISPLPGTDDENNDGSGDGDENAVVPFAKILTPSDANNGGGFSVPRYCADSIFPPLNFQKNTPFQNLKINDVHENVFEFRHIFRGTPRRHLLTTGWSKFVNFKNLVAGDSVVFMKNSKGEIFAGVRRAKQSSSRGCGGGGGGSGTDWSAMMISVGGVRKRDEEGEKKKQEVKVVKEGFSRNGKGKLAPEKVAEAAELAVQGMPFEVVYYPSPGWTDFVVKAEIVDEVRRVMWSPGMRVKMDVETEDSSRVSCFQGTVSAVCVPENGQWRGSPWRMLQVAWDEPEVLQNSKLVSPWQVELVSATPALHPAFTPTKRFRAAQGSLVLPDGEGDPFFPMTGYSNSTMGQLNQTLSSYGTFPAGMQGARHDFFSTLIFYKFSGDTSRQYLGNSSGNNSAPSSATLSTELNIGSSQSDNLSPDSQGSLHSFGMEFAGTHSFNSMKPRSASIQLFGITIETKQPTESVLHLPSCTKHDSCKGCSEIKAMDKLEFSLAYSNGRQA 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0504 607 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 592 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal21g0504 607 SUPERFAMILY DNA-binding pseudobarrel domain 131 237 IPR015300 -
Lal21g0504 607 ProSiteProfiles B3 DNA-binding domain profile. 136 238 IPR003340 GO:0003677
Lal21g0504 607 MobiDBLite consensus disorder prediction 1 22 - -
Lal21g0504 607 MobiDBLite consensus disorder prediction 497 530 - -
Lal21g0504 607 CDD B3_DNA 136 231 IPR003340 GO:0003677
Lal21g0504 607 Pfam B3 DNA binding domain 136 237 IPR003340 GO:0003677
Lal21g0504 607 Pfam Auxin response factor 303 386 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lal21g0504 607 Gene3D - 341 414 - -
Lal21g0504 607 SMART B3_2 136 238 IPR003340 GO:0003677
Lal21g0504 607 Gene3D - 134 238 IPR015300 -
Lal21g0504 607 PANTHER AUXIN RESPONSE FACTOR 19 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0504 Lal-Chr21 3601912 3606395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0504 23 602 B3 DNA Binding Superfamily AT1G77850 45.222 3.66e-151 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal21g0504 B3 1.6e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0504 - - lang:109326149 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0504 21 3601912 3606395 Lal21g0504 21 3601912 3606395 ECH
Lal21g0504 21 3601912 3606395 Lal4g0388 4 2663919 2667664 LSH