Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0502 ATGAACAAAGAAGGTCTTGGACTTGAAATCACTGAGCTAAGGTTGGGTCTGCCCGGTGGAGAGTCTATAAAGGCGGTGAATAAGAATGATAAGAAGCGGGTGTTCTCGGAGGTTAACGGTGGTGGCCGGGGCGAAAATAGTTGCTTCGGAGATCGGAAAGTTGAGAAGAAAAATCAAGTGGTGGGGTGGCCTCCAGTGTGCTCTTACTGGAAGAAGAACTATATGAATGAAGCTTCAAATATGTATGTTAAAGTTAGCATGGATGGGGCTCCCTTCTTGCGTAAAATTGATATTGGCATGCATAAGGAATATAAGGAGTTAGCCTTGGCTTTGGAGAAACTTTTTGATTGCTATGGATTGGTGGAGGCGTTGAAGGATGAGGACAATTGTGAACACATTCCCATCTATGAGGACAAAGATGGTGACTGGATGCTTGTTGGAGATGTTCCTTGGGAGCAAATTAAATCCATAGGCCCAAATATCTTGTTACAACATTGCTTTATGGGTGCAGCTTCTCAGTTCTTCCCCTTTCCAGGTTGCGCCACCCCTCTTCTTCTTCTTCAACACTTCACCAACGTGGGACGTGCTGCTTACGCGCCTAAACAAGGTCGTGATTTACTTAAGAAGCTTGCATCTAGGAGATTTTATTTGACTGCAACTAAGGCACAATTCATATCCACCATGTCAGTGAGTGAAGATAATGTGAGCAGCGTCAAAAGGCGGTTGGCTCAGCTGTTTGAGACATCTCTCAGGGAAACTGTACCTGGTGAGCCAGATGTAGTGCCGATGGTTGATTCCTGCAGCGACAAATCTGGTGGGAAATTCGGCGATTACCAATGTAATAATGCAATGGTTCTATGGTCAAAGATAAAAGGGAAGCAGACAGGATATAAGGGTCCCCCGGCGGTTGGAAAGGCCATCATGACAAATCTTCCTCCATCTGAAATGATAGAATCATGTTCTGTAGCTGGTCCAGGATTTGTGAATGTCGTCTTATCAAAGAATTGGATAGCACAGAACTCAACAGAAATATCCCCCTTGCAGATCTTACTGAGGATGCTAATTGATGGTATTGATACATGGGCACCACTACTTCCTGTCAAGACGGCCGTGGTTGATTTTTCCTCACCTAATATAGCAAAGGAAATGCATGTTGGTCACCTGAGATCTACCATTATCGGGGATACATTAGCCCGTATGCTGGAATTTTCACATGTGAAAGTTCTCCGCCGAAATCATGTTGGCGACTGGGGAACGCAGTTTGGGATGCTGATTGAATTTCTCTTCGAAAAATTTCCGAACCCAGAAGAAGTTAACGAAGCTGCCATTGGAGATCTTCAGGCATTCTATAAGGCCTCAAAACTGAGATTCGATAGTGATCCTGAATTTAAGCAGAGGGCACAACAGGCTGTGGTCCGGCTCCAGGGTGGAGAAGACAGGTATCGCAAGGCATGGAAGAAAATTTGTGAAATTAGTAGGACTGAATTCCACAGGGTCTATGAACGCCTAGGAGTTAATTTGGAGGAAAAGGGAGAGAGCTTCTATAATCCGTATATCCCTGGGGTTTTGAATGAACTAGATAATAAAGGACTGATTAAAGAAAGTGAGGGTGCTCGTGTGATATTTGTTGATGGTGTAAATATACCACTTATTGTTGTGAAGAGCGATGGTGGCTACAATTATGCTTCAACTGATCTAGCAGCACTCTGGTATCGGCTAAATGAAGAAAAAGCTGAGTGGATTATATATGTTACAGATGTTGGGCAGCAGCAACACTTTGATATGTTTTTTAAGGCTGCTAAGCGTGCTGGTTGGCTGCCAGCTGATGATAGCCTGTATCCAAAAGCAACTCATGTAGGTTTTGGTCTTGTTCTTGGGGAAGATGGAAAACGATTTCGGACTCGCAACACTGAGGTTGTTCGCTTGGTTGATTTGCTAGACGAAGCCAAGAATCGCAGTAAAACTGCTGTTCTCGAACGTGATGCTGCTAAAGATTGGCCTGAGGAGGAGGTTGAGAAAACAGCAGAGGCGGTTGGTTATGGTGCTGTTAAGTATGCTGACTTGAAGAACAACAGATTATCGAATTACACATTCAATTTTGATCAGATGCTGAATGATAAGGGCAATACTGCTGTTTATTTGCTGTATGCACATGCTAGGATCTGTTCCATTATCAGGAAATCTGGTAAAGACATAGAAGAATTAAAGAAAAATGGGAAAATAGTGTTGGATCATGATGGCGAGCGTGCATTAGGTCTTCATCTGATACAATTTTCTGAGGTTATTGGGTCACCCGAGGAAACTAGTAGGCTGTTGCTGTGTGAAGCAACTGCAATTGTGATGAGAAAGTGCTTTTATCTCCTTGGAATTGAACCTGTTTACAAGATATGA 2391 0.4345 MNKEGLGLEITELRLGLPGGESIKAVNKNDKKRVFSEVNGGGRGENSCFGDRKVEKKNQVVGWPPVCSYWKKNYMNEASNMYVKVSMDGAPFLRKIDIGMHKEYKELALALEKLFDCYGLVEALKDEDNCEHIPIYEDKDGDWMLVGDVPWEQIKSIGPNILLQHCFMGAASQFFPFPGCATPLLLLQHFTNVGRAAYAPKQGRDLLKKLASRRFYLTATKAQFISTMSVSEDNVSSVKRRLAQLFETSLRETVPGEPDVVPMVDSCSDKSGGKFGDYQCNNAMVLWSKIKGKQTGYKGPPAVGKAIMTNLPPSEMIESCSVAGPGFVNVVLSKNWIAQNSTEISPLQILLRMLIDGIDTWAPLLPVKTAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSHVKVLRRNHVGDWGTQFGMLIEFLFEKFPNPEEVNEAAIGDLQAFYKASKLRFDSDPEFKQRAQQAVVRLQGGEDRYRKAWKKICEISRTEFHRVYERLGVNLEEKGESFYNPYIPGVLNELDNKGLIKESEGARVIFVDGVNIPLIVVKSDGGYNYASTDLAALWYRLNEEKAEWIIYVTDVGQQQHFDMFFKAAKRAGWLPADDSLYPKATHVGFGLVLGEDGKRFRTRNTEVVRLVDLLDEAKNRSKTAVLERDAAKDWPEEEVEKTAEAVGYGAVKYADLKNNRLSNYTFNFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKNGKIVLDHDGERALGLHLIQFSEVIGSPEETSRLLLCEATAIVMRKCFYLLGIEPVYKI 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0502 796 Pfam AUX/IAA family 54 152 IPR033389 -
Lal21g0502 796 TIGRFAM argS: arginine--tRNA ligase 273 764 IPR001278 GO:0004814|GO:0005524|GO:0006420
Lal21g0502 796 Gene3D HUPs 366 706 IPR014729 -
Lal21g0502 796 PANTHER BNAC08G12170D PROTEIN 207 761 - -
Lal21g0502 796 PANTHER BNAC08G12170D PROTEIN 760 795 - -
Lal21g0502 796 Gene3D - 74 163 - -
Lal21g0502 796 SMART Arg_tRNA_synt_N_2 240 332 IPR005148 GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420
Lal21g0502 796 Pfam DALR anticodon binding domain 714 762 IPR008909 GO:0004814|GO:0005524|GO:0006420
Lal21g0502 796 PRINTS Arginyl-tRNA synthetase signature 369 384 IPR001278 GO:0004814|GO:0005524|GO:0006420
Lal21g0502 796 PRINTS Arginyl-tRNA synthetase signature 384 400 IPR001278 GO:0004814|GO:0005524|GO:0006420
Lal21g0502 796 PRINTS Arginyl-tRNA synthetase signature 408 421 IPR001278 GO:0004814|GO:0005524|GO:0006420
Lal21g0502 796 PRINTS Arginyl-tRNA synthetase signature 551 572 IPR001278 GO:0004814|GO:0005524|GO:0006420
Lal21g0502 796 SMART dalr_1_4 714 796 IPR008909 GO:0004814|GO:0005524|GO:0006420
Lal21g0502 796 SUPERFAMILY Nucleotidylyl transferase 366 708 - -
Lal21g0502 796 Pfam Arginyl tRNA synthetase N terminal domain 242 332 IPR005148 GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420
Lal21g0502 796 Gene3D - 708 763 - -
Lal21g0502 796 ProSiteProfiles PB1 domain profile. 80 166 IPR000270 GO:0005515
Lal21g0502 796 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 709 795 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lal21g0502 796 SUPERFAMILY Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain 236 340 IPR036695 GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420
Lal21g0502 796 Pfam tRNA synthetases class I (R) 368 700 IPR035684 -
Lal21g0502 796 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 377 388 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lal21g0502 796 SUPERFAMILY CAD & PB1 domains 75 156 - -
Lal21g0502 796 CDD ArgRS_core 371 635 IPR035684 -
Lal21g0502 796 Gene3D - 233 346 IPR036695 GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420
Lal21g0502 796 Gene3D - 764 796 - -
Lal21g0502 796 PANTHER ARGINYL-TRNA SYNTHETASE 760 795 IPR001278 GO:0004814|GO:0005524|GO:0006420
Lal21g0502 796 PANTHER ARGINYL-TRNA SYNTHETASE 207 761 IPR001278 GO:0004814|GO:0005524|GO:0006420
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0502 Lal-Chr21 3573207 3585534 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0502 83 163 B3 DNA Binding Superfamily AT4G23980 37.037 6.52e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal21g0502 tRNA-synt_1d 1.8e-121 CL0039
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0502 K01887 - gmx:100796303 929.087