Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0497 ATGGGTCGTGTTAAATTGGAGATAAAGAGAATAGAGAACACCACAAATCGACAAGTTACATTCTCAAAACGTAGAAATGGCCTCATCAAGAAAGCTTATGAATTATCCATCTTATGTGACATTGATATTGCTCTTATCATGTTCTCTCCATCTGGAAGACTCAACCATTTTTCAGGCAGAAGAAGGATCGAGGATGTTTTCACTCGTTTCATCAACCTTCCTGATCAAGAAAGAGATAACGCTGTGAATTTTCCTGAGCCACACTATGACAGGGGGATCCAGAACAAGGAGTATTTGCTTAGGACCCTTCAACAACTAAGGAGTGAAAATGACATAGCTCTTCAATTGGTCAAGATATATGAACCCGACCCATCGAAGATGACATCTATGGAGGATCTTGAATCTACTGAAAAGAACCTCGTAGATACATTGACACGTGTTATGCAAAGAAAGGAATATTTGCTGAGCAACCATCTTCCGACATATGATACATCTGCTATTCAGGGAATCCCTGCAAATTTCGAAAGTGTAGGGTGGTTGCAGGATGGCAACCAGAACCATCACCATATATTTGATGCATCTACTCCTTTGGACCCTCTCAGGGATCTATCATCGAATGTGTATGATCCATTTTCACAAGGGACGAGTTCACATGCAGAAGCAAGAAGTAATGGAGAGTGTCATGTAACAAATAATCCAAGTGATGGATGGCCACAAGGATACACATTTTATCCTCATATGCAACATAACATGGTTGGAACAGACATGCAAAATATAATGCAACATGGGCAATTGAATGTTTCAATCACAAACCCACAAATGCAACCACCCAAGAATAATGAAAGTGGAAGTGGAAGTGCAGAATATGAGTGTAATTCTCATCATCAACTTAACGCCCAATGA 903 0.3998 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLNHFSGRRRIEDVFTRFINLPDQERDNAVNFPEPHYDRGIQNKEYLLRTLQQLRSENDIALQLVKIYEPDPSKMTSMEDLESTEKNLVDTLTRVMQRKEYLLSNHLPTYDTSAIQGIPANFESVGWLQDGNQNHHHIFDASTPLDPLRDLSSNVYDPFSQGTSSHAEARSNGECHVTNNPSDGWPQGYTFYPHMQHNMVGTDMQNIMQHGQLNVSITNPQMQPPKNNESGSGSAEYECNSHHQLNAQ 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0497 300 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal21g0497 300 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal21g0497 300 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal21g0497 300 MobiDBLite consensus disorder prediction 269 300 - -
Lal21g0497 300 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Lal21g0497 300 MobiDBLite consensus disorder prediction 211 233 - -
Lal21g0497 300 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal21g0497 300 Gene3D - 13 88 IPR036879 GO:0003677|GO:0046983
Lal21g0497 300 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Lal21g0497 300 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 117 257 - -
Lal21g0497 300 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 118 - -
Lal21g0497 300 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal21g0497 300 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal21g0497 300 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal21g0497 300 PANTHER SERUM RESPONSE FACTOR HOMOLOG 117 257 - -
Lal21g0497 300 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0497 Lal-Chr21 3524830 3529280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0497 1 267 Type I MADS-box Gene Family AT1G22130 51.456 3.23e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal21g0497 SRF-TF 1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0497 - - adu:107460753 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0497 21 3524830 3529280 Lal21g0497 21 3524830 3529280 ECH