Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0491 ATGGCAGCTATGATGGATTTATACAATAGCATATCACAGCTTCATTCAGATCCTTTAAGAGGTGAGTTAATGGAAGTTCTTGAACCTTTTATGAAAACAGCTTCAACCCCTTCTCCTTCTCATTCTTCAGAATCACCATTCCCTTTCTCAAACTCATGTCAACTTTCTACTTCTTACTCTTACAACACTCCTTCTTCCAATCACTTCAATTCCTGTTCTTTTCTCTCTACTCAACAACCAATTGATTCCTCATCCAACAGCCAAAACTTCACAGGCTTTGGATTTGGTTCTTCTCATTCTTCTCTACTTGGCTTCAACCACTTAACCTCATCTCAGATCAATCAGATCCAGGCTCAGATTCAACTTCAGAATATGCAAAACTTTCAGCACCACAACACAGCCTTCAATTTCCTCAGTCCAAAACCTATCCAAATGAAGCACATCGGAACCGCACCAAAACCCATAAAACTCTACAGAGGGGTGAGGCAAAGACACTGGGGGAAATGGGTTGCTGAGATTAGACTCCCAAAAAACAGAACAAGGCTTTGGCTTGGTACCTTTGACACTGCTGAAGAAGCTGCTTTGGCTTATGACAATGCTGCTTATAAACTCAGGGGTGATTTTGCTAGGCTCAACTTCCCAAACCTCAAACACCAAGGTTCATGTGTTGGTGGTGAGTACAAGCCTCTTCATTCCTCAGTTGATGCCAAGCTTCAAGCTATTTGTGAAGGCTTGGCTGATATGCAAAAACAAGTGAAGTCAAAGAAGGCTGTGACCTCATCAAAGAGATCAAAATCAAAACTTTGTTCTAAGGTGTCTGAGCCAGAAGAATCAGTATCATTTGATGTCATGGGGTTGGAGAACTCTTGCAAGATGAAAACTTTCTCATTGTCTCCAGTGATGACAGAGAGTGAGGTATCTGAAGGTTCTTCACCACTTTCAGATCTTACATTTGCTGATGTTAATGAGCCTCATTGGGAAGGTGCTTCGGATAATTTTAATCTGCAAAAGTATCCTTCTTATGAGATTGATTGGGATTCCCTGTGA 1047 0.4126 MAAMMDLYNSISQLHSDPLRGELMEVLEPFMKTASTPSPSHSSESPFPFSNSCQLSTSYSYNTPSSNHFNSCSFLSTQQPIDSSSNSQNFTGFGFGSSHSSLLGFNHLTSSQINQIQAQIQLQNMQNFQHHNTAFNFLSPKPIQMKHIGTAPKPIKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAYKLRGDFARLNFPNLKHQGSCVGGEYKPLHSSVDAKLQAICEGLADMQKQVKSKKAVTSSKRSKSKLCSKVSEPEESVSFDVMGLENSCKMKTFSLSPVMTESEVSEGSSPLSDLTFADVNEPHWEGASDNFNLQKYPSYEIDWDSL 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0491 348 SMART rav1_2 157 220 IPR001471 GO:0003700|GO:0006355
Lal21g0491 348 PRINTS Ethylene responsive element binding protein signature 158 169 IPR001471 GO:0003700|GO:0006355
Lal21g0491 348 PRINTS Ethylene responsive element binding protein signature 180 196 IPR001471 GO:0003700|GO:0006355
Lal21g0491 348 Gene3D AP2/ERF domain 157 215 IPR036955 GO:0003700|GO:0006355
Lal21g0491 348 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 347 - -
Lal21g0491 348 ProSiteProfiles AP2/ERF domain profile. 157 214 IPR001471 GO:0003700|GO:0006355
Lal21g0491 348 SUPERFAMILY DNA-binding domain 157 214 IPR016177 GO:0003677
Lal21g0491 348 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 4 347 - -
Lal21g0491 348 Pfam AP2 domain 158 206 IPR001471 GO:0003700|GO:0006355
Lal21g0491 348 CDD AP2 156 216 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0491 Lal-Chr21 3493589 3494635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0491 1 348 AP2-EREBP Transcription Factor Family AT1G78080 51.499 4.85e-94 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal21g0491 AP2 8.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0491 K09286 - gmx:732559 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0491 21 3493589 3494635 Lal21g0491 21 3493589 3494635 ECH
Lal17g0423 17 2851831 2853454 Lal21g0491 21 3493589 3494635 LSH
Lal21g0491 21 3493589 3494635 Lal4g0376 4 2565598 2566632 LSH
Lal22g0451 22 2950290 2952599 Lal21g0491 21 3493589 3494635 PCT
Lal6g0485 6 3102309 3104129 Lal21g0491 21 3493589 3494635 PCT
Lal21g0491 21 3493589 3494635 Lal22g0451 22 2950290 2952599 PCT
Lal21g0491 21 3493589 3494635 Lal6g0485 6 3102309 3104129 PCT