Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0484 ATGGGAAGGTCACCATGCTGTGATGAGAATGGCCTTAAGAAGGGACCCTGGACTCTTGAGGAAGATCAAAAGCTTATCCAACACATTCAACAACATGGTCATGGAAGTTGGAGAGCACTTCCTAAGCTAGCTGGTCTTAACAGATGTGGGAAAAGTTGCAGGCTAAGGTGGACCAACTATTTAAGGCCTGATATCAAGAGGGGAAAGTTTTCAAAAGAAGAGGAGCAAACAATTCTGCATCTTCATTCCATCCTTGGAAACAAGTGGTCAACAATTGCAACTCATCTCCCAGGCAGAACCGATAATGAGATCAAGAATTTTTGGAACACTCATTTAAAGAAAAAGTTGATTCAGATGGGTTTTGATCCAATGACTCATCAGCCAAGAACTGACCTTGTTTCCACCTTGCCATATCTACTAGCTTTGGCCAACATGACAGACATTATGGATCATAACCAATCATTGGATGAACATGCTCTTAGGTTACAAGCAGAAACAGTTCAGCTAGCCAAGCTTCAATACCTTCATTTTTTACTCCAGACTTCAAATTCCTCAAGTTCAAATAATCCCTCAATGAAAGAGAATAATCAAGTTATAGAGTTATTGCCACAACTGGATAATACTAATAATAATAACCCAAACTCATTTTCTCAAGAGATTTTTGCTGGCTTTGGCTCTCAACCACTCCACCACCAAAACAATATGCTATCTGACTTTTTAGACCCACAAGTCTCTTTCAATTCACAATCATTTTTACATAATGAGCAGGGTCAAGGTACTAACTGTGCAATCATAAGTCAAGGGGATAACACTACATTTGATCATGACTCAACTAATTTGATTATTCCATCATCTATTACTCCAAATGCAATGGGGACCTCAATTACTAGCAATCCAGGAGATGCTAGTAGCAGCACTTCAAGCTATGTGGGAGGAATATCATCTTATTGGCCTGAGTTATTTTTTGAGGACACCATTAAATTGCATGAGCTATCATAG 999 0.3914 MGRSPCCDENGLKKGPWTLEEDQKLIQHIQQHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSKEEEQTILHLHSILGNKWSTIATHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLVSTLPYLLALANMTDIMDHNQSLDEHALRLQAETVQLAKLQYLHFLLQTSNSSSSNNPSMKENNQVIELLPQLDNTNNNNPNSFSQEIFAGFGSQPLHHQNNMLSDFLDPQVSFNSQSFLHNEQGQGTNCAIISQGDNTTFDHDSTNLIIPSSITPNAMGTSITSNPGDASSSTSSYVGGISSYWPELFFEDTIKLHELS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0484 332 PANTHER TRANSCRIPTION FACTOR MYB39-LIKE 1 320 - -
Lal21g0484 332 CDD SANT 69 112 IPR001005 -
Lal21g0484 332 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lal21g0484 332 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal21g0484 332 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lal21g0484 332 Gene3D - 13 66 - -
Lal21g0484 332 SMART sant 66 114 IPR001005 -
Lal21g0484 332 SMART sant 13 63 IPR001005 -
Lal21g0484 332 CDD SANT 16 61 IPR001005 -
Lal21g0484 332 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal21g0484 332 Gene3D - 69 116 - -
Lal21g0484 332 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal21g0484 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal21g0484 332 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 320 - -
Lal21g0484 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0484 Lal-Chr21 3444764 3446803 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0484 1 326 MYB Transcription Factor Family AT1G34670 51.093 1.51e-108 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal21g0484 Myb_DNA-binding 4.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0484 K09422 - gmx:100782792 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0484 21 3444764 3446803 Lal21g0484 21 3444764 3446803 ECH
Lal17g0411 17 2765570 2767491 Lal21g0484 21 3444764 3446803 LSH
Lal21g0484 21 3444764 3446803 Lal4g0368 4 2505310 2507194 LSH