Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0468 ATGGCGCGACAACTACAACAACATCTTCCATGGACATCTTCACTAACTCACCTTTCTACACAACACCATCAAACATCTTTCTTATCTCTTCACAACCAACCCATAACCAATTTCTCTCTACGTCTTTCCCTTATTACAACCAAACATACCCACTTTCACTTCAATCTCAGATTTTCATCAACCACCCAACAACAACAACAAGAAACACAAAAAACTGATTTTGATGAACCCAATGAAGAATTTTCTCAAACCAGGTTGCTTGCTCAGAACGTGCCTTGGACCACTACCCCTGAAGACATTCGTTCTTTGTTTGAGAAATTCGGAAAAGTCATTGAAGTCGAGCTTTCTATGTATAACAAGACCCGAAACAGAGGTTTGGCGTTTGTCGAAATGGGTTCACCAGAAGAAGCTCTTCAAGCTATGAAAAATCTTGAATCTTCTGAGTTTGAGGGTCGTATAATAAAACTGAATTACGCCAAACCAAAAAAGAAGAAAACTCCACCACCCACTGCGGCACCAAAGCCAGAAGTATTATTTAACTTGTTTGTTGCAAACTTGTCATATGAAGCAAGGTCTAAGGATCTCAAGGAGTTTTTTGATTCAGGAATTGGTAGTGGGAGTGTTGTTTCTGCAGAGGTTATATTTCATGATAAGCCTAGAAAGGCATCTGGTTATGGATTTGTGTCCTTCAAGTCCAAGAAACAAGCTGATCAGGCTTTTTCCGAATTCGAAGGAAAGAATTTTATGGGAAGACCAATCAGGATTGAACGTAGTAAGCGATTTGTTAAACTATCAGCTGAGGAGACTGCAAAGTCTAAAGATGCATCTTCTGAGTTGAGCGTTAATGAGGCCGAAGCGAACATAGCTGATAAAAATGCATCTTCTGAGTTGAGCGAGAACGAGGCAGAATCAGATAAAGCTGATTGA 927 0.3991 MARQLQQHLPWTSSLTHLSTQHHQTSFLSLHNQPITNFSLRLSLITTKHTHFHFNLRFSSTTQQQQQETQKTDFDEPNEEFSQTRLLAQNVPWTTTPEDIRSLFEKFGKVIEVELSMYNKTRNRGLAFVEMGSPEEALQAMKNLESSEFEGRIIKLNYAKPKKKKTPPPTAAPKPEVLFNLFVANLSYEARSKDLKEFFDSGIGSGSVVSAEVIFHDKPRKASGYGFVSFKSKKQADQAFSEFEGKNFMGRPIRIERSKRFVKLSAEETAKSKDASSELSVNEAEANIADKNASSELSENEAESDKAD 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0468 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 254 IPR000504 GO:0003723
Lal21g0468 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 154 IPR000504 GO:0003723
Lal21g0468 308 SMART rrm1_1 85 157 IPR000504 GO:0003723
Lal21g0468 308 SMART rrm1_1 180 256 IPR000504 GO:0003723
Lal21g0468 308 Gene3D - 55 164 IPR012677 -
Lal21g0468 308 Gene3D - 165 266 IPR012677 -
Lal21g0468 308 PANTHER OS08G0483200 PROTEIN 9 287 - -
Lal21g0468 308 SUPERFAMILY RNA-binding domain, RBD 61 169 IPR035979 GO:0003676
Lal21g0468 308 CDD RRM_SF 90 157 - -
Lal21g0468 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 260 IPR000504 GO:0003723
Lal21g0468 308 CDD RRM_SF 181 256 - -
Lal21g0468 308 SUPERFAMILY RNA-binding domain, RBD 175 260 IPR035979 GO:0003676
Lal21g0468 308 MobiDBLite consensus disorder prediction 267 308 - -
Lal21g0468 308 Coils Coil 281 301 - -
Lal21g0468 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 161 IPR000504 GO:0003723
Lal21g0468 308 MobiDBLite consensus disorder prediction 275 295 - -
Lal21g0468 308 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 9 287 - -
Lal21g0468 308 MobiDBLite consensus disorder prediction 60 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0468 Lal-Chr21 3332525 3335154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0468 84 260 Eukaryotic Initiation Factors Gene Family AT3G16380 29.348 1.25e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0468 - - lang:109340717 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0468 21 3332525 3335154 Lal21g0468 21 3332525 3335154 ECH
Lal21g0468 21 3332525 3335154 Lal4g0353 4 2405194 2408806 LSH