Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0467 ATGACCCTAGAAGCTGTGGTTTTTCAACAAGATCCATTTGGTTATGGTTGCAATAAAGATTATTTGTACCCCTTAGTAGGAGAAGGAGCTAAAAGTACTACTTGTGAACCAGCATGGAACCAAGACTATGGTTTCCAAACATCATCAGCAGAAGAAGAAAAACTCCTTGGAATTATCAACAACAACATAGAACAAAGTCTCCATGCAACTACTTGGGATTCTTCTTCTACTTCAGTGTTTCAAAACACTAAGGAACAATGGGATTATTCTCACTCTTCACCTGAGACATGCACTGTTGATCAATCTCTTACTGCACCTAATTCCTCCATGGAAACCACCACCACAGTGCCCACCACCACAGGGAGGCGTAAACGACGCCGTACCAAGAACAAAGAGGAAATTGAGAACCAGAGAATGACCCACATTGCAGTTGAGCGAAATCGAAGGAAACAGATGAATGAGTACCTCACGGTGCTTCGAACCTTGATGCCTAATTCTTATGTTCAAAGGGGTGACCAAGCGTCTATTATTGGGGGCGCCATTAATTTCGTGAAAGAGTTAGAGCAACTTTTACAATCCATGGAGGGTCAAAAGAACATTAAACAACCGCATCAGGAGAATTTTGGTTTAAATGGGTCACTAACTTTTGCTGAGTTTTTCACATTTCCACAGTATACAACGTGTGAAAATCAGAATAACAATATAGGCACGACCATGGGACAGAACCATGAGCAGAAACAGTGGGGTGTTGCAGACATAGAAGTGACCATGGTCGATAGCCATGCTAACATGAAAATACTCTCAAAGAAACGTTCTGGTCAGCTTATGAAAATTGTTGTTGGACTTCAAAGTCTTAGGCTCGGTATTCTTCACCTTAATGTTACTACTGTGGATGATATGGTACTTTACTCAGTTAGTGTAAAGGTAGAGGAAGGGTGTCAGCTGAATACTGTGGATGAAATTGCAGCTGCTGTTAATCAACTTTTACGCACAATCCAAGATGAAGCTGCTTTCAACTGA 1020 0.4127 MTLEAVVFQQDPFGYGCNKDYLYPLVGEGAKSTTCEPAWNQDYGFQTSSAEEEKLLGIINNNIEQSLHATTWDSSSTSVFQNTKEQWDYSHSSPETCTVDQSLTAPNSSMETTTTVPTTTGRRKRRRTKNKEEIENQRMTHIAVERNRRKQMNEYLTVLRTLMPNSYVQRGDQASIIGGAINFVKELEQLLQSMEGQKNIKQPHQENFGLNGSLTFAEFFTFPQYTTCENQNNNIGTTMGQNHEQKQWGVADIEVTMVDSHANMKILSKKRSGQLMKIVVGLQSLRLGILHLNVTTVDDMVLYSVSVKVEEGCQLNTVDEIAAAVNQLLRTIQDEAAFN 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0467 339 MobiDBLite consensus disorder prediction 105 119 - -
Lal21g0467 339 Pfam Helix-loop-helix DNA-binding domain 137 188 IPR011598 GO:0046983
Lal21g0467 339 Gene3D - 123 206 IPR036638 GO:0046983
Lal21g0467 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 205 IPR036638 GO:0046983
Lal21g0467 339 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 339 - -
Lal21g0467 339 CDD bHLH_AtFAMA_like 139 202 - -
Lal21g0467 339 SMART finulus 142 193 IPR011598 GO:0046983
Lal21g0467 339 PANTHER MAX DIMERIZATION, MAD 1 339 - -
Lal21g0467 339 MobiDBLite consensus disorder prediction 105 132 - -
Lal21g0467 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 187 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0467 Lal-Chr21 3323838 3326788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0467 1 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 44.037 1.66e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal21g0467 HLH 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0467 - - gmx:100789380 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0467 21 3323838 3326788 Lal21g0467 21 3323838 3326788 ECH
Lal17g0397 17 2666048 2669219 Lal21g0467 21 3323838 3326788 LSH
Lal6g0457 6 2908700 2910750 Lal21g0467 21 3323838 3326788 PCT
Lal21g0467 21 3323838 3326788 Lal6g0457 6 2908700 2910750 PCT