Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0462 ATGGAAGAAATGGAGAAGGACATGGAATTTGTCCAGCACCAGGAAACGTGCATCAAACTTCCGCCGCCGCCACCACCACCACCACCGGAAAACAACTCTCATGCCACCACTGAGAATGCCATAATCACTGCCCCACCTAGTCAAAATGATGGACCCACTATGGGAACAATCAAATATAGAGAATGTCAAAAGAACCATGCTACAGTCATTGGTTGCTATGTGGTTGATGGTTGCGGTGAGTTTCTTGGGTCTGGAGAAGAAGGCACTCTTGAAGCGGTTATCTGCGCCGTATGCAACTGCCACCGTACTTTCCACCGTCAGGAGATTGACAACGGCGGTGTGCCATACCAGCCACCGATGCACCACCACAACAATCAAGTCTTTGCTTGCTGCCACTGTGTGCCACCACCACCACCTCCTTGTGTCGGCTACCATCACCACGTGGTGGTAGCTTCACCGGTGTCCCAGTACAGCCCTCTCCCTACCGCATACGACGGTGGTTCCAACCTTGAAGAGAAAGATATGTCGAACCCTAGTAGCAGTGGTGGGTCCAAAAAGAGGTTTAGAACGAAATTCAGCAAAGAGCAGAAGGATAAAATGCTGGCATTTGCTGAGAAAATTGGGTGGAGAATAAAAAAACATGATGGTGCTGTTGTGGAGCAATTCTGTGCTGAAACTGGTTTGAAGAGACATGCGCTGAATGTGTGGATGCACAACAACAAGCACACTCATGGAAAGAAAACTTAG 747 0.49 MEEMEKDMEFVQHQETCIKLPPPPPPPPPENNSHATTENAIITAPPSQNDGPTMGTIKYRECQKNHATVIGCYVVDGCGEFLGSGEEGTLEAVICAVCNCHRTFHRQEIDNGGVPYQPPMHHHNNQVFACCHCVPPPPPPCVGYHHHVVVASPVSQYSPLPTAYDGGSNLEEKDMSNPSSSGGSKKRFRTKFSKEQKDKMLAFAEKIGWRIKKHDGAVVEQFCAETGLKRHALNVWMHNNKHTHGKKT 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0462 248 MobiDBLite consensus disorder prediction 1 35 - -
Lal21g0462 248 Pfam ZF-HD protein dimerisation region 57 109 IPR006456 -
Lal21g0462 248 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 59 108 IPR006456 -
Lal21g0462 248 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 42 247 - -
Lal21g0462 248 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 185 241 IPR006455 -
Lal21g0462 248 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 42 247 - -
Lal21g0462 248 MobiDBLite consensus disorder prediction 172 186 - -
Lal21g0462 248 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 58 109 IPR006456 -
Lal21g0462 248 SUPERFAMILY Homeodomain-like 173 246 IPR009057 -
Lal21g0462 248 MobiDBLite consensus disorder prediction 162 191 - -
Lal21g0462 248 MobiDBLite consensus disorder prediction 18 32 - -
Lal21g0462 248 Gene3D - 170 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0462 Lal-Chr21 3293813 3294559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0462 57 243 ZF-HD Transcription Factor Family AT4G24660 52.660 2.42e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lal21g0462 ZF-HD_dimer 6.1e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0462 21 3293813 3294559 Lal21g0462 21 3293813 3294559 ECH
Lal17g0387 17 2590011 2590766 Lal21g0462 21 3293813 3294559 LSH
Lal21g0462 21 3293813 3294559 Lal4g0342 4 2296222 2296977 LSH
Lal22g0424 22 2761734 2762828 Lal21g0462 21 3293813 3294559 PCT
Lal21g0462 21 3293813 3294559 Lal22g0424 22 2761734 2762828 PCT