Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0461 ATGGGTTATTTCTCTTGCAATGCCGAATCTGCAATCGCCACCTGCGATCCCCATTACTGGGATCTCAACAAAACCACCACCACCACCACCACTCGCACTATCAGAATATTTCACTACTCCGACCTCGTCGCCGCCACTAACTCCTTCTCCGACGACAACTTCTTAGGCAAAGGCAGCCATGGCAGCGTCTACAAAGCCACTCTCGACGCCGGAAAACTCATCGCCGCCGTCAAAACAACAAAGCTCACCACCAAAACAACAACCTCCCGCCACCACCACCACCGCCACATCACAACCCCCGCAGAAAACGAGATCGAGATTCTCTCTCATGTAAACAGCACCCGAATGGTGAACCTTATCGGTTTCTCCACTGATCCAAATGGTAACAAATTAATCGTCGTTCAGTACATGCCGAACGGTTCGTTACATGATTTACTTCACTCTCCGGTTCGACCACCCGGTTGGACCGAACGAATCCGGTTCGCTCTCCAAGTCGCGAAAGCGGTTCATACACTTCACTCTTCTAACCCTCCAATAATTCATCGAGACATTAAATCCTCTAACGTATTAATCGACGACGATAGAAACGCGAGGCTCGGTGATTTTGGACTTGCACTAAGGGGACACGTGGAGGACGTTCGCGTTTTGTGCACGCCACCGGCGGGGACGTTAGGTTATCTCGATCCATGCTATCTTGCGCCGGAGGATCTCTGCGCCAAGACTGATGTATTCAGTTTCGGGATCTTGTTATTGGAGATTGTAAGTGGAAGAAACGCTATTGATTTGAATTACAGTCCTCCGTCGGTGGTGGACTGGGCGGTGCCGTTGATCAAGCGTGGTGAGTTCGGCTATATATGTGACCGGCGGATTGGAGTTCCGGCGGATGCAGCGGTGGTGAGGCAGCTGGCGATTCTGGCGGCGAGGTGCGTGAGGTCGACGGCGGAGAGGAGGCCGTCGATGGAGGAGGTGGTGGAGGGTGTTAAGAATGTGAGGAAGAGGATTGGTGCGGTGGCGGTGTGGAGTGGGTTGAGCAGGCGCGTGGCGCGTGAGAGGTATGGGGTGTTTGAATGTGGTGACGTTGATAGGAGTGAAGAAGTTGTGAGAGTATTAAAGGGTGGGAACAGAAGAAGGAATGGGAAAGTATCCAGTGTGGGAGGTGTAGAGAATCAGATTGGACCTTCTTCCAATCAAGTGAATCGAGTGGTGAGGTGTAAGTCCATTGGTTCTGGTTCTATAATGATACCGGGTTCGGATCACAACGCGGATGTGAACCCGACCCGAATTGAGATTAAGAAGGGTAACATGAGGCTGAAGAAATCTAAGTCTATGGGTTTTTTGCAAGGTACTACTACCCTTTTACATTATGGCAGTGAGAATAACTGGAATAGTGGCCCCATTCATTCAATAGATATGGCAATGTCCAAGTTGGTCATTACACATAAGTTGGAAGAAAAAATGGTTGAAGCACCACTAGTTAGGAATTTGAGTATCGCAGAATAA 1500 0.4993 MGYFSCNAESAIATCDPHYWDLNKTTTTTTTRTIRIFHYSDLVAATNSFSDDNFLGKGSHGSVYKATLDAGKLIAAVKTTKLTTKTTTSRHHHHRHITTPAENEIEILSHVNSTRMVNLIGFSTDPNGNKLIVVQYMPNGSLHDLLHSPVRPPGWTERIRFALQVAKAVHTLHSSNPPIIHRDIKSSNVLIDDDRNARLGDFGLALRGHVEDVRVLCTPPAGTLGYLDPCYLAPEDLCAKTDVFSFGILLLEIVSGRNAIDLNYSPPSVVDWAVPLIKRGEFGYICDRRIGVPADAAVVRQLAILAARCVRSTAERRPSMEEVVEGVKNVRKRIGAVAVWSGLSRRVARERYGVFECGDVDRSEEVVRVLKGGNRRRNGKVSSVGGVENQIGPSSNQVNRVVRCKSIGSGSIMIPGSDHNADVNPTRIEIKKGNMRLKKSKSMGFLQGTTTLLHYGSENNWNSGPIHSIDMAMSKLVITHKLEEKMVEAPLVRNLSIAE 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0461 499 SMART serkin_6 49 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal21g0461 499 SUPERFAMILY Protein kinase-like (PK-like) 33 325 IPR011009 -
Lal21g0461 499 ProSiteProfiles Protein kinase domain profile. 49 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal21g0461 499 Gene3D Transferase(Phosphotransferase) domain 1 137 338 - -
Lal21g0461 499 Gene3D Phosphorylase Kinase; domain 1 21 136 - -
Lal21g0461 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Lal21g0461 499 ProSitePatterns Protein kinases ATP-binding region signature. 55 78 IPR017441 GO:0005524
Lal21g0461 499 PANTHER - 1 481 - -
Lal21g0461 499 PANTHER OS01G0750732 PROTEIN 1 481 - -
Lal21g0461 499 Pfam Protein kinase domain 51 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0461 Lal-Chr21 3272754 3274253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0461 32 334 Receptor kinase-like Gene Family AT3G59420 37.987 4.06e-65 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Lal21g0461 Pkinase 1.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0461 - - gmx:100799382 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0461 21 3272754 3274253 Lal21g0461 21 3272754 3274253 ECH
Lal17g0385 17 2585251 2586294 Lal21g0461 21 3272754 3274253 LSH