Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0448 ATGTACGATCCTATGAACCAGATCGTTGCCATCGACGACAATAATGACACCTCCGCCACCATTCAACCCATTGACAACAACCACCACACCCATATCATTCATTATGAAGACACTAACGGTGACGTAAATGAAGATGGTACAACCGATAATAGGGTTTATGTTTCTGGCCCTATTAATATGCCTACTCAAACTCTTGATGATTCTAGCCAGCTCACTCTCTCGTTTCGTGGCCAAGTTCAAGCAGTGTTGTTACTGTTGGGGGGATGTGAAGCGCCTTCGGGTTCACAATGTGGGGATGTACCACCTCTAGATCAGAGGGGTATATCAGAATATCCAAAAGGTAGTCAATCACAGCGAGCAGCCTCATTAGTTAGGTTCCGTCAGAAGAGGAAAGAGCGGTGCTTTGATAAGAAAGTTAGATACATTGTGCGTCAAGATGTTGCTCTCAGAATGCAACGTAATAAGGGTCAATTTACTTCAGCTAAGAAACAAGATGGAGGTAATGGTTGGGGTACAGACCAAGAATCAGAGCAGGATGTTCAATCAGAAACCTCTTGCACACATTGCGGCATAAGTTCAAAGTCCACTCCAATGATGCGGAAAGGGCCATCCGGTCCAAGGACACTTTGCAATGCTTGTGGACTCTTTTGGGCAAATAGGGGTACTTTAAGGGACATTTCCAAAAAAAACCATGAACGCGCACTACCTGAGCAGGTTGGTGAGGCTAATAATAATAATTTGGAGTGTGGGACTCCTATCCCTGCACATAACAATCTTGTTACTTTCACTGATGATAATAAGCCAGCAGCTATGGTATCTGATCTTTGA 828 0.4408 MYDPMNQIVAIDDNNDTSATIQPIDNNHHTHIIHYEDTNGDVNEDGTTDNRVYVSGPINMPTQTLDDSSQLTLSFRGQVQAVLLLLGGCEAPSGSQCGDVPPLDQRGISEYPKGSQSQRAASLVRFRQKRKERCFDKKVRYIVRQDVALRMQRNKGQFTSAKKQDGGNGWGTDQESEQDVQSETSCTHCGISSKSTPMMRKGPSGPRTLCNACGLFWANRGTLRDISKKNHERALPEQVGEANNNNLECGTPIPAHNNLVTFTDDNKPAAMVSDL 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0448 275 ProSiteProfiles CCT domain profile. 119 161 IPR010402 GO:0005515
Lal21g0448 275 CDD ZnF_GATA 185 230 IPR000679 GO:0006355|GO:0043565
Lal21g0448 275 ProSitePatterns GATA-type zinc finger domain. 186 213 IPR000679 GO:0006355|GO:0043565
Lal21g0448 275 Pfam CCT motif 119 161 IPR010402 GO:0005515
Lal21g0448 275 Pfam GATA zinc finger 186 222 IPR000679 GO:0006355|GO:0043565
Lal21g0448 275 PANTHER GATA TRANSCRIPTION FACTOR 28 23 252 IPR045280 GO:0006355
Lal21g0448 275 PANTHER GATA TRANSCRIPTION FACTOR 25 23 252 - -
Lal21g0448 275 ProSiteProfiles GATA-type zinc finger domain profile. 180 238 IPR000679 GO:0006355|GO:0043565
Lal21g0448 275 SMART GATA_3 180 233 IPR000679 GO:0006355|GO:0043565
Lal21g0448 275 MobiDBLite consensus disorder prediction 157 189 - -
Lal21g0448 275 Gene3D - 176 235 IPR013088 GO:0006355|GO:0008270
Lal21g0448 275 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 178 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0448 Lal-Chr21 3139185 3143920 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0448 4 261 Tify Gene Family AT4G24470 48.057 7.01e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal21g0448 CCT 2.6e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0448 - - gmx:100784789 286.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0448 21 3139185 3143920 Lal21g0448 21 3139185 3143920 ECH
Lal21g0448 21 3139185 3143920 Lal4g0322 4 2138513 2142781 LSH