Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0447 ATGGATGAATTGGAAGAGGGAAATTGTAATAATTGTTCTTCACGTAAGAGTGAGCTCACTCTTTCTTTTGAGGGCAAAGTTTATGTCTTTCCCTTTGTCACTCCTAATCAGGTGCAAGCTGTTTTGCTGCTTTTGGGAGGACGGGATGTGCAGACAAGTGTGCCTGCAGTTGAAATACCATTTGATCAAAGTAACAGGGGCATCGGTGATGCTCCAAAGCGTTCAAATCTTTCACGAAGAATAGCGTCCTTGGTCAGGTTTCGCGAAAAACGCAAGGAAAGGTGTTATGACAAGAAAATTAGGTACATCATTAGAAAAGAGGTGGCACAGAGGATGCATAGGAAGAATGGGCAGTTTACATCCTTGAAGGAAGGCCCAGGTTCATCTAATTGGGATTCTGCACAGAATGCTCATCAAGATAGCACTCCTCATTCTGATACTGTACGTAGATGTCATCATTGTAGTGTCAGTGAAAATAATACTCCTGCAATGCGTCGTGGGCCAGGTGGACCAAGGACTTTATGTAATGCATGCGGCCTTATGTGGGCTAACAAGGGTACACTCAGAGATCTCAGCAAGGGAGGGAGAAATAATTCTGTTGAGCAACGTGATATGGAGACTCCTACTGATGTCAAGCCTACTGTTCCGGAAGGGGAGATGCATGGCACCTATGATGAGCTAGGAGTATCGGAATATTCTTCCAAGGCTATTGCTGCTGAAAGTTCTAATAATCATGTTGCTGTAAACCATAGTGATGATGAGGAATTGGTTGAATCTGTGAAACACTTTACAAACACCCTGCCTCTGGGAATTGATCATTCTTCAGTGAATGATGATGAACAGGAACATTTGCTTCACCTTTCTCATCTTTCAGATACAGATATTGACATTCCTGAAAAACCTTGA 906 0.4294 MDELEEGNCNNCSSRKSELTLSFEGKVYVFPFVTPNQVQAVLLLLGGRDVQTSVPAVEIPFDQSNRGIGDAPKRSNLSRRIASLVRFREKRKERCYDKKIRYIIRKEVAQRMHRKNGQFTSLKEGPGSSNWDSAQNAHQDSTPHSDTVRRCHHCSVSENNTPAMRRGPGGPRTLCNACGLMWANKGTLRDLSKGGRNNSVEQRDMETPTDVKPTVPEGEMHGTYDELGVSEYSSKAIAAESSNNHVAVNHSDDEELVESVKHFTNTLPLGIDHSSVNDDEQEHLLHLSHLSDTDIDIPEKP 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0447 301 MobiDBLite consensus disorder prediction 116 149 - -
Lal21g0447 301 ProSiteProfiles CCT domain profile. 80 122 IPR010402 GO:0005515
Lal21g0447 301 Pfam tify domain 15 46 IPR010399 -
Lal21g0447 301 ProSitePatterns GATA-type zinc finger domain. 151 178 IPR000679 GO:0006355|GO:0043565
Lal21g0447 301 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 9 299 - -
Lal21g0447 301 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 144 196 - -
Lal21g0447 301 MobiDBLite consensus disorder prediction 189 219 - -
Lal21g0447 301 SMART tify_2 12 47 IPR010399 -
Lal21g0447 301 ProSiteProfiles GATA-type zinc finger domain profile. 154 203 IPR000679 GO:0006355|GO:0043565
Lal21g0447 301 Gene3D - 142 206 IPR013088 GO:0006355|GO:0008270
Lal21g0447 301 SMART GATA_3 145 198 IPR000679 GO:0006355|GO:0043565
Lal21g0447 301 MobiDBLite consensus disorder prediction 196 210 - -
Lal21g0447 301 Pfam GATA zinc finger 151 187 IPR000679 GO:0006355|GO:0043565
Lal21g0447 301 Pfam CCT motif 80 121 IPR010402 GO:0005515
Lal21g0447 301 PANTHER GATA TRANSCRIPTION FACTOR 28 9 299 IPR045280 GO:0006355
Lal21g0447 301 ProSiteProfiles Tify domain profile. 12 47 IPR010399 -
Lal21g0447 301 CDD ZnF_GATA 150 194 IPR000679 GO:0006355|GO:0043565
Lal21g0447 301 MobiDBLite consensus disorder prediction 121 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0447 Lal-Chr21 3132386 3137672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0447 13 193 Tify Gene Family AT1G51600 54.497 3.50e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal21g0447 CCT 4.3e-12 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0447 - - gmx:100801328 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0447 21 3132386 3137672 Lal21g0447 21 3132386 3137672 ECH