Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0442 ATGCCAATACTAGGGGTGCAACTTACTATTGAAGATCATCATGTGATGATAGACAATGGCATAGTAAGAGTCACATTATCAAACCCAGAGGGACTTGTCACTGGAATACAGTATAATGATATGGACAACTTGCTTGAAGTTTTGAATGATGAATCTAATAGAGGGTATTGGGACCTTGTGTGGAGCTCACCCACAAGTACAAGAACCACTGGTAGATTTGATGTGATAAAAGCAACAACTTTAAGAGTTGTAGTGGAAAATGAGGACCAAGTTGAGTTATCCTTCTCAAGGACATGGGATACCTCTGTAGAGGGCAAATTAGTACCATTAAATATTGATAAAAGGTTCATAATGCTTCGTGGTTCTTCTGGCTTCTACTCATATGCAATTTATGAGCACTTACAAGATTGGCCTGCTTTCAATCTTGATGAAACCAGAATTGCTTTCAAACTTAGAAAAGACAAGTTCCATTATATGGCAATGGCTGATAATAGACAAAGAGATATGCCTCTTCCAGATGACCGGTCAGAACCTAGAGGCCAAGTTCTTGCTTACCCAGAAGCAGTTCTACTTCTCAATCCTATTGAACCACAACTCAAAGGAGAGGTGGATGACAAGTACCAATATTCATGTGACAACAAAGATAGCCAAGTTCATGGGTGGATATGTAAGGACCCAGCAGTAGGATTCTGGTTAATTACACCAAGTAATGAATTTCGATCTGGTGGTCCTCTCAAACAAAACTTAACTTCTCATGTTGGACCTACTACTCTTGCCGTGTTTTTGAGTGCCCATTATAGTGGAGAGGATTTGGTCCCAAAGTTCAATTCTGGTGAGGCATGGAAGAAAGTTTTTGGTCCAATTTTCATGTATTTGAATTCTGCATATGATGGAGATGACCCCCTTAATCTATGGCAAGATGCTAAACTTCAGATGTTAGTGGAAGTACAAAGTTGGCCCTATGGTTTTCCTGAATCTGAAGATTTCCCAAAGTGGGACCAACGTGGTAATGTCAGTGGCAGAATATTGGTCAAAGAGAGGTATATAAGTGATGACTACATATCAGCAAAAGGTGCTTATGTTGGTTTGGCTTCACCAGGGGACATTGGATCATGGCAAAGAGAATCCAAGAATTATCAGTTTTGGGCTAAAGCAGATGATGATGGCTATTTCTGCATCAGCAATATACGTACTGGGGACTATAATGTTTATGCATGGGTACCTGGTTTTATTGGTGACTATAAATATGATGTAGTTATAACCATAACAGAAGGTAGTGACATTGACATTGGTGATCTTGTTTATGAGCCACCAAGAGATGGTCCAACATTGTGGGAAATAGGCATACCTGATCGCTCAGCTGCTGAGTTCTATGTACCTGATCCAAATCCCAAATATATCAACAAACTCTATCTTAATCATTCTGACAAGTTTAGGCAGTATGGGTTATGGGAGAGATATGCAGAACTATACCCTGACAAAGACTTAGTCTTCACAATTGGTGTTAGTGACTACACCAAGGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGATAATACATATCAAGGAACCACATGGCAAATCAAGTTTCAGCTTAGCAATGTGAACAAAAATAGCACCTATAAACTAAGATTGGCTTTGGCATCAGCAACATTTTCTGAACTTCAGGTTCGAGTTAATGATCCAAAGGTGAATCATCCTCTATTTTCAAGTGGATTGATAGGAAGAGATAACTCTATTGCTAGACATGGAATTCATGGACTTTATTGGCTTTATAATGTGGACATATCTGGTGCTAGATTTGTTGAAGGAGATAATATAATCTTTTTGACACAAGCAAGAGGCAATAGTCCATTTCTGGCTATTATGTATGATTATATTCGTTTAGAAGCTCCACCCATTTTCAATAAGAAAATTTCAGAAAACAAGTTGTGTTTTACTCAAAGATTCAATTCAATCCAATGA 1971 0.3851 MPILGVQLTIEDHHVMIDNGIVRVTLSNPEGLVTGIQYNDMDNLLEVLNDESNRGYWDLVWSSPTSTRTTGRFDVIKATTLRVVVENEDQVELSFSRTWDTSVEGKLVPLNIDKRFIMLRGSSGFYSYAIYEHLQDWPAFNLDETRIAFKLRKDKFHYMAMADNRQRDMPLPDDRSEPRGQVLAYPEAVLLLNPIEPQLKGEVDDKYQYSCDNKDSQVHGWICKDPAVGFWLITPSNEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFNSGEAWKKVFGPIFMYLNSAYDGDDPLNLWQDAKLQMLVEVQSWPYGFPESEDFPKWDQRGNVSGRILVKERYISDDYISAKGAYVGLASPGDIGSWQRESKNYQFWAKADDDGYFCISNIRTGDYNVYAWVPGFIGDYKYDVVITITEGSDIDIGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYLNHSDKFRQYGLWERYAELYPDKDLVFTIGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFQLSNVNKNSTYKLRLALASATFSELQVRVNDPKVNHPLFSSGLIGRDNSIARHGIHGLYWLYNVDISGARFVEGDNIIFLTQARGNSPFLAIMYDYIRLEAPPIFNKKISENKLCFTQRFNSIQ 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0442 656 Gene3D - 5 307 IPR014718 GO:0030246
Lal21g0442 656 CDD RGL4_C 445 632 - -
Lal21g0442 656 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 636 - -
Lal21g0442 656 Pfam Rhamnogalacturonate lyase family 10 203 IPR010325 -
Lal21g0442 656 SUPERFAMILY Starch-binding domain-like 333 429 IPR013784 GO:0030246
Lal21g0442 656 SUPERFAMILY Galactose-binding domain-like 440 632 IPR008979 -
Lal21g0442 656 SUPERFAMILY Galactose mutarotase-like 8 294 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lal21g0442 656 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 636 - -
Lal21g0442 656 Pfam Polysaccharide lyase family 4, domain III 443 631 IPR029411 -
Lal21g0442 656 Gene3D - 441 632 - -
Lal21g0442 656 Gene3D - 332 430 - -
Lal21g0442 656 CDD RGL4_N 8 304 - -
Lal21g0442 656 CDD RGL4_M 334 433 IPR029413 -
Lal21g0442 656 Pfam Polysaccharide lyase family 4, domain II 357 429 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0442 Lal-Chr21 3088807 3093347 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0442 1 634 Polysaccharide Lyase AT1G09890 70.283 0.0 943
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0442 K18195 - gmx:100793563 1186.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0442 21 3088807 3093347 Lal21g0442 21 3088807 3093347 ECH