Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0438 ATGAGTAGTGGTTGGAGAAGAGCTTTTTGCACTAGGGATCCAGAATCAAGTTTATCAGATAACAAAGAACAACCCATTAGCCCCAACCCCAGAAGCTGTGGCAGATTGAATTTCTTTTCCAGTGGTAGCAACCCTTCTACTCCAAGGTTACATCAATCTCAATCTCCAAGCTTGCGTTGCAGAACAATTTCAGAAGCTGCTCAAGCACCTATAAAAAATGAAAGCCCCAGAATTCAGAACAAAACTCTATCCACCTCAAATCCTTCCTCTCCCCGCACCCCTTTGAAGCTATCCCTCTTCAAAAACAGCTTCAAATTCCGGAGTAGCTGTGGAATCTGTTTGAACAGTGTGAAGACGGGGCAAGGAACAGCGATTTACACTGCAGAATGTTCACATGCTTTTCATTTCCCATGCATCTCTGCACATGTTAGAAACCATGGTTCTCTCTTATGCCCTGTTTGCAACGCTACTTGGAAAGACGTGCCATTACTCGTTGCTCACAAGAATGAAAAAAACGACGTCGTTGCTATTGATAGAAGGAAAACAGAGACCTCTTCCTCTAAATGGGAATGGGGACAAGGGGGTAGCAAAGTTCAGAAATGGGGTCTTATAGAATGGGCCGTTGATTTGATGACCGGAAACCTGCCACGTTTAGAAGTCGGTTTGGGCTTGGACGATGTCGTTCCTGTTGAGAAGTCG 699 0.4478 MSSGWRRAFCTRDPESSLSDNKEQPISPNPRSCGRLNFFSSGSNPSTPRLHQSQSPSLRCRTISEAAQAPIKNESPRIQNKTLSTSNPSSPRTPLKLSLFKNSFKFRSSCGICLNSVKTGQGTAIYTAECSHAFHFPCISAHVRNHGSLLCPVCNATWKDVPLLVAHKNEKNDVVAIDRRKTETSSSKWEWGQGGSKVQKWGLIEWAVDLMTGNLPRLEVGLGLDDVVPVEKS 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0438 233 MobiDBLite consensus disorder prediction 1 57 - -
Lal21g0438 233 MobiDBLite consensus disorder prediction 20 57 - -
Lal21g0438 233 MobiDBLite consensus disorder prediction 69 94 - -
Lal21g0438 233 CDD RING-H2 110 155 - -
Lal21g0438 233 Pfam RING-like zinc finger 110 139 IPR001841 -
Lal21g0438 233 ProSiteProfiles Zinc finger RING-type profile. 110 155 IPR001841 -
Lal21g0438 233 SUPERFAMILY RING/U-box 103 160 - -
Lal21g0438 233 MobiDBLite consensus disorder prediction 73 94 - -
Lal21g0438 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 197 IPR013083 -
Lal21g0438 233 SMART ring_2 110 154 IPR001841 -
Lal21g0438 233 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 170 - -
Lal21g0438 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 3 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0438 Lal-Chr21 3044525 3048270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0438 110 160 C3H Transcription Factor Family AT1G74410 41.176 5.89e-06 44.3