Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0419 ATGGATGAGTTCGATAGTGGTGGCCGGAGCGCCGACAAGGCTCCCGGAGCTGAAGATGAGGGAAGTACTGTTCCACTTCCGGAGAAGGTCCAGGTTGGTGGTTCACCATTATACCGAGTTGACAGGAGGCTTGGAAAGGGAGGATTTGGACAAGTCTATGTTGGTCGCCGAATGGGAGCTGGTGCCGGCGCTATTGAGGTAGCTTTAAAATTTGAGCATAAAAGCAGCAAAGGGTGCAATTATGGACCTCCTTATGAGTGGCAAGTTTATAATGCATTAGGAGGTAGTCATGGTGTTCCTCGAGTTCATTACAAGGGACGGCAAGCGGACTACTATATTATGGTCATGGATATGCTTGGCCCTAGTCTATGGGATGTTTGGAATAATAACTCACACATGATGTCTACTGAAATGGTGGCATGTATTGCAATTGAAGCTATCTCCATATTAGAGAAGATACATTCTAGAGGATATGTGCATGGTGATGTAAAACCTGAGAACTTTTTGCTTGGCACCCCAGGAACTCCTGATGAAAAGAAGTTATTTTTGGTTGATCTTGGATTAGCAACTCGGTGGCGTGATAGTTCAAGTGGCCTTCATGTTGATTATGATCAACGTCCAGATGTATTTAGGGGTACAGTTCGTTATGCTAGTGTGCATGCTCATCTTGGTAGAACAGGTAGCAGGAGAGATGACTTGGAATCTCTTGCTTACACACTTATCTTCCTTCTTCGTGGTCGGCTACCTTGGCAAGGATATCAGGGGGAAAATAAAGGATTTCTTGTTTGCAAGAAGAAGATGGCCACTTCTCCTGAAACTTTGTGCTGCCTTTGTCCTCAACCTTTCCGGCTGTTTCTTGAATATGTGGTGAATTTGAAGTTTGATGAAGAGCCAAATTATGCGAAGTATATATCGCTTTTTGATGGAATTGTTGGTCCAAATCCTGACATCAGACCTATAAACACTGAGGGTGCTCAGAAGCTTATATGTCAAGTTGGACAGAAGAGAGGGCGATTGACTATGGAAGAGGATGACGATGAACAACCAAAGAAGAAGGTCAGAATGGGAATGCCAGCAACACAATGGATTAGTATTTACAATGCTCGCCGACCAATGAAGCAAAGGTATCATTACAATGTTGCTGATGTGAGACTCTCCCAACACGTTGACAAAGGAAATGAGGATGGATTATTTATCAGCAGTGTGGCTTCTTGTACTAATCTTTGGGCACTAATTATGGATGCGGGCACTGGATTCACTGCACAAGTTTATGAACTCTCACCCCACTTTCTTCACAAGGAATGGATTATGGAACAGTGGGAGAAGAATTATTATATTAGTGCCTTAGCTGGAGCTAATAATGGGAGCTCATTGGTTGTAATGTCTAAAGGGACCCAGTATTTACAGCAATCCTATAAAGTTAGTGATTCATTTCCATTCAAGTGGATTAACAAAAAATGGAGAGAAGGATTTTATGTCACTGCTATGGCCACTGCTGGCAATAGATGGGCAATTGTTATGTCCCGTGGAGCTGGATTCTCAGACCAGGTTGTGGAACTTGATTTCCTTTATCCCAGTGAAGGTATTCATCGGAGGTGGGATAATGGTTACCGAATCACCTCAACTGCTGCAACATGGGACCAAGCTGCTCTTGTTCTCAGCATCCCAAGAAGAAAACCAGCAGATGAAACCCAAGAGACTCTTCGCACATCTGCTTTTCCTAGCACTCATGAAAAATGGGCAAAAAACCTCTATATAGCATCTATTTGTTACGGGAGAACAGTGTCGTGA 1791 0.435 MDEFDSGGRSADKAPGAEDEGSTVPLPEKVQVGGSPLYRVDRRLGKGGFGQVYVGRRMGAGAGAIEVALKFEHKSSKGCNYGPPYEWQVYNALGGSHGVPRVHYKGRQADYYIMVMDMLGPSLWDVWNNNSHMMSTEMVACIAIEAISILEKIHSRGYVHGDVKPENFLLGTPGTPDEKKLFLVDLGLATRWRDSSSGLHVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMATSPETLCCLCPQPFRLFLEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTEGAQKLICQVGQKRGRLTMEEDDDEQPKKKVRMGMPATQWISIYNARRPMKQRYHYNVADVRLSQHVDKGNEDGLFISSVASCTNLWALIMDAGTGFTAQVYELSPHFLHKEWIMEQWEKNYYISALAGANNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGNRWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWDNGYRITSTAATWDQAALVLSIPRRKPADETQETLRTSAFPSTHEKWAKNLYIASICYGRTVS 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0419 596 SMART serkin_6 38 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal21g0419 596 PANTHER CASEIN KINASE-RELATED 15 571 - -
Lal21g0419 596 CDD STKc_CK1 38 307 - -
Lal21g0419 596 Gene3D Transferase(Phosphotransferase) domain 1 11 355 - -
Lal21g0419 596 SUPERFAMILY Protein kinase-like (PK-like) 38 311 IPR011009 -
Lal21g0419 596 PANTHER - 15 571 - -
Lal21g0419 596 ProSitePatterns Protein kinases ATP-binding region signature. 44 70 IPR017441 GO:0005524
Lal21g0419 596 MobiDBLite consensus disorder prediction 1 30 - -
Lal21g0419 596 ProSiteProfiles Protein kinase domain profile. 38 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal21g0419 596 MobiDBLite consensus disorder prediction 1 16 - -
Lal21g0419 596 ProSitePatterns Serine/Threonine protein kinases active-site signature. 158 170 IPR008271 GO:0004672|GO:0006468
Lal21g0419 596 Pfam Protein kinase domain 38 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0419 Lal-Chr21 2901815 2908014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0419 38 193 EF-hand Containing Proteins AT1G35670 28.125 1.77e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Lal21g0419 Pkinase 1.7e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0419 - - gmx:100800125 1174.84