Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0413 ATGTCTACATCACGACCGTTCGATATGATAATGGATTTGAATGACTCCAAATACCTGTGGAAGATTGCAGTCAGAATAACTGACATTTGGTATGTGCAACTACCTCCCAAACCCGGACATCTGGAAATGATATTAATGGATTCTAAGGGGGACAGAATTCAAGTCTCTGTCCGAAAGGATCAGTTTAACGAATGGAGAGAACATTTGGTTGAGAGTTCAACTTATGTCATGCACAATTTTAATGTCATGCACAATGACATCCAATTTAAGGCATGTGACCATGTTTACAGAATGCAATTCACTGCCGGTACCACTCTCAAACAAAGAGAATTTCCTGATATTCCTGAATGGGAATATGATTTCAAAAAGTTTGGTGACATCCTTGACGGAAACGGTAGAAATAATTTACTAATAGATATCATTGGTGCTTTTGATAAGGTAATATTCTCCCAAACACAAGGCAATTTGAAGAAAGTTGTCTTCAGTTTGAAAGATTTTAGTGGTGATTTCATTAACTGTACTATGTGGGAATCACATGCTACCAAATTCGAGAAACACTATAACAACCACTGTAAGTATCCACATAGCATTTCCAACTCATGGTGCGGATCAAAAATATTGATTGGTGAAGAAATTCCCAACATTGACAAGTACAAACAAAGTTTTTCAACTTTTAGTCTATCATGTGATACATTGAGCCATAGTAACAGCCAAATGTCACAATATTCTAACTTATCTGATGATGAGCGATTTATGTATAAAGCTGAAGTCAAGAGTATTACAGAAATTTCTGCAATTACATCTTCTGAGGAAATAACCTGTGTAACAGTTGGGACGACAGCAATGTTTGTTGTTGGCAAACACGGATGTATAATGTCTCTTTCACACCCCTTCGATATGATCACTGATGTGAATGATTCCAAACATTTTTGGAAAATAGCTGTTCGAATAACAAAACTTTGGTTTGTTCAAAAACCACCCAAATCTGGACATTTAGAGATGGTTTTGATGGATTCAAAGGGGCACAAAATTCAAGTCTCCGTTGTAAAGGAAGATTTTATTCGATGGCGTAATTATTTAGTGGAGTATGATACTTATATGATGCAAAACTTTGATGTGATGCTAAATGACTGTGAATTTAAAGCATGCGACCATCTTTATCGGATGGAGTTCAATGCCAATACAATAGTTGAACGACTTATATGTCCTGCTATTCCTCTTTTTGAATACGAATTCAAAAAATTTGCTGAAATTGTAGCTGGCCAGTTTTCAAGTTATTTGTTAATAGAAATTATCGGTGTAGTTGAATACAAGTCCATTTTTTCCCAAACAGAAACAAAATTAAAGAAAGTTACCTTTGATCTGATAGATTTTTGCGGTGATATCATTACATGTAATCTATGGCATTCACTTGCGATGAAATTTATCAATTATTACAAAAAAAGGCGAAATGGTGAGCCAATGATCATTTTATTAACAAATGCTAAAGTCAAGAAAGCAAAAGGTGATTGTCCAACAATAGTTTCAAGTTCATGGTGTGGATCAAAGTTATTGATTGGGGAAGAAATAAATGACATTGCAAAGTATAAGCAAAGGTATAGCATGGAAACCAATATTCAACATGCAGTTTTTTCTTTGCCTGAATTCATTGCTGTGTCTTTTACTGCTGAACATGATCCAGACCACCTTGAAGTCATAACTTCTTCCAAGAGAATGTGGGGTGAGTTAGATTTGGATTTGGCTCAAAGCCCTTTACAATCTTCCTCTGGAATTTCATCTTCCAATGTTGCAAAGCATATGAAGACTAAATAA 1812 0.3526 MSTSRPFDMIMDLNDSKYLWKIAVRITDIWYVQLPPKPGHLEMILMDSKGDRIQVSVRKDQFNEWREHLVESSTYVMHNFNVMHNDIQFKACDHVYRMQFTAGTTLKQREFPDIPEWEYDFKKFGDILDGNGRNNLLIDIIGAFDKVIFSQTQGNLKKVVFSLKDFSGDFINCTMWESHATKFEKHYNNHCKYPHSISNSWCGSKILIGEEIPNIDKYKQSFSTFSLSCDTLSHSNSQMSQYSNLSDDERFMYKAEVKSITEISAITSSEEITCVTVGTTAMFVVGKHGCIMSLSHPFDMITDVNDSKHFWKIAVRITKLWFVQKPPKSGHLEMVLMDSKGHKIQVSVVKEDFIRWRNYLVEYDTYMMQNFDVMLNDCEFKACDHLYRMEFNANTIVERLICPAIPLFEYEFKKFAEIVAGQFSSYLLIEIIGVVEYKSIFSQTETKLKKVTFDLIDFCGDIITCNLWHSLAMKFINYYKKRRNGEPMIILLTNAKVKKAKGDCPTIVSSSWCGSKLLIGEEINDIAKYKQRYSMETNIQHAVFSLPEFIAVSFTAEHDPDHLEVITSSKRMWGELDLDLAQSPLQSSSGISSSNVAKHMKTK 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0413 603 Gene3D - 112 229 IPR012340 -
Lal21g0413 603 Gene3D - 404 542 IPR012340 -
Lal21g0413 603 CDD RPA1_DBD_B_like 431 533 - -
Lal21g0413 603 Pfam Domain of unknown function DUF223 42 136 IPR003871 -
Lal21g0413 603 Pfam Domain of unknown function DUF223 333 422 IPR003871 -
Lal21g0413 603 SUPERFAMILY Nucleic acid-binding proteins 119 225 IPR012340 -
Lal21g0413 603 SUPERFAMILY Nucleic acid-binding proteins 410 537 IPR012340 -
Lal21g0413 603 CDD RPA1_DBD_A_like 312 397 - -
Lal21g0413 603 PANTHER REPLICATION FACTOR A 1, RFA1 23 238 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lal21g0413 603 PANTHER REPLICATION FACTOR A 1, RFA1 314 502 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lal21g0413 603 SUPERFAMILY Nucleic acid-binding proteins 297 399 IPR012340 -
Lal21g0413 603 CDD RPA1_DBD_A_like 21 105 - -
Lal21g0413 603 SUPERFAMILY Nucleic acid-binding proteins 6 108 IPR012340 -
Lal21g0413 603 Gene3D - 5 108 IPR012340 -
Lal21g0413 603 Gene3D - 297 399 IPR012340 -
Lal21g0413 603 PANTHER BNAC08G15530D PROTEIN 314 502 - -
Lal21g0413 603 PANTHER BNAC08G15530D PROTEIN 23 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0413 Lal-Chr21 2869570 2874619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0413 20 176 Core DNA Replication Machinery Family AT4G19130 23.810 2.86e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0413 - - lang:109343677 426.787