Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0405 ATGGCTTTGGATGAAGAAACCACCAAGAAAGTTATACGTCAAGTTGAGTTCTATTTCAGCGATAGTAATCTTCCAACTGATGTTTTCATGAGAAAAACTGTTAGTGAAAGTGAAGATGGCATGGTTAGTTTAGCTTTGATTTGTTCTTTTAATCGAATGCGAAAGCATCTTAATTTGGATGATGTAAAGCCGGACCAAGTCTCTGATGATACTGTTAGCGCTGTTGCTCAAGTTTTGAGGAACGCTGCTTCGCTTAAGGTCTCCGAGGATGGCAAAAAAGTTGGCAGGGCAACCGAACTTCCGAAAGTAGAAGAGTTAATTGAGCAGGTGGAGATTAGAACTCTTGCTGCATCACCATTTGAATATGATCTGAAGCTTGAAGACGTAGAAACCTTTTTCAATCAATATGCAAAGGTCAATAGTGTCCGACTGCCCCGTCATGTTGGAGACAAAAAGTTGTTCTGTGGCACCGCCCTTGTTGAATTCTCATCAGAGGAGGAAGTAGAAAAAGTTTTGAAGCAAAAACTGGTCTATGCTGGGGCTGAGTTAGAATTGAAACCAAAGAAGGACTTTGATGCAGAGAGAGAGAGAGAATTAGAAGCCTACGAAAAATCTCGTCCACCTGTGGGTTCTAACCGCCAGAATAACTCAAATGAAGAAGAAAGCTACCCTAAAGGCTTAATCATTGCTATCAAACTAAAGAGCATTTCAGATGAAATTCCTTCAAAGCAAAATGGTGCTGATCAACAAGCCAATGACAACAATGGTATCTCCAAAACAGATGAAAAACCCTCCTCTGAAACTACTGTTGGGGAAAGTGATAAAAAGGTATCAGAAAATGTTGACACTGTTGAAGACAACAATGAGGCCAAAGAAGAAAAGGATGCTGTTAATGAAGAAAAGAGTCAAGAAACCGGTGAAAAAGTTCCAGCTTCTGCTTACAAGGACAACATGGATGTTGTCTTGAGGGAGGACTTGAAGAGTGTCTTTGAGAAGTTCGGTGCAGTGAAGTACATTGATTTCAAGATTGGAGAAGAGTCAGGATACATCCGGTTTGATGAAGCCGAAGCTGCTCAGAAAGCTCGTGCTGCTGCAGTCCTTTCTGAGAAGGGCGGCTTGGTTGTGAAGAATTTTGTTGCTATTCTAGATCCAGTGTCTGGTGAGGCCGAGAAAGAATACTGGACCTTGCTTCGTGGTAATCAAAAAGTCAGACACCAAAACTTTAAGGGTAACCGAGGAAGAGGAGGAGGAAGGCATGGTGGTAGAGGCGGAAAACATGCACGGTCTAGAGATAATAATGGAGATTCATGTGTTTATTCACAGAAGTTAGCTGTTGGGGATTTTGGAGAGACACTTGTGGAGAGAATTGTAGTCAAATCAGAATTGAAGTGTGCTATTTTGATTATCTGCCAAAAAACTATGGAAAGTGAGAAGAAAGTCCCTGCTCGGTTGGATGGTGGTGTTCAGAAAGGCAGGGCATTGCATGGGAGGATTACTGGCCCTACAAGGCGTTCTACAAAAGGACAATGGACACCTGAGGAGGATGAGATTTTGTGCCAGGCAGTACAGCGATTTAAGGGAAAGAATTGGAAAAAAATAGCCGAGTGTTTCAAGGATAGAACTGATGTACAATGCTTGCATCGGTGGCAGAAAGTCTTAAATCCAGAACTTGTCAAAGGTCCATGGTCTAAAGAGGAAGATGAAATAATTATTGCTTTGGTGAACAAATACGGTCCTAAAAAGTGGTCTAATATCGCACAACATTTACCTGGGCGTATTGGTAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTTCTATAAACAAGGAAGCATGGACGCAAGACGAGGAGTTGGCTCTAATACTTGCTCATGAAAAATATGGGAACAAATGGGCAGAACTAACAAAATATTTGCCTGGAAGGACAGACAATGCAATAAAAAATCACTGGAACAGTTCCGTGAAAAAGAAATTGGATTCTTACAAGACATCAGGCTTGCTTGCTCGATTACAATCTTCAAGGTTGCAGTGTAGCAGAGATGAGAATGGTCCCAGGGGGATTGAAGGAGGGGAAGTTTCACAGTGTAGCCAGGAGTCAGCTAATGCCCGTCACTTTCCTTCTGCCACTGAAATGAGCAATGCTGTTTTTCAAACTAGAGAGAAAAACAGGCCAAATGAAGAATCTAGTCTAGGAAAGGATTATAGTCCTAGTCAAGCATCCTGTTCAGAGCCGTATTACGTGTCTCTAGATGATGTTGAATTCATTGAGCAGAAACAAGCACAAGAACCTGGAAATTTCACAAATGGGGATTGCCAGCTTAATTTACATGCCCTAACCGATATTTCCTCATTGGACTTTGTGCAGGAATCCTCAAGGTTGCAAAATGACTGTATAGCTCCAAGTGAAAGCCGTGACATGCTTATATCTAATGATGAATGCTGCCGATTGCTATTTTCAGAGGCAACGAGTGATGAATGTTTTTCCTCTGGAGATAATAAATGTGTAAATATGTCTGACCTGTCTAGATGCACTTCGTTTAGCTTCCAGACATCTGCTGCTCCATCAATATCTTCTGCTAGTGATGATAGGTTGTTATATACTGCTGAAGTCAATCAGTTAGTTGGATCTGTGGATCAGCAGTTTGTCTGCCCGACATCTGCTCCACCAGTACCTTCTGCTAGTGATGGTAGGTTGCTGTATATTTCTGGAATCGACCAGTTAGTTGGGTATGAGGATCAGCAGTTTGTCTCCAGATCAGAGGACAACGTCCTTTATGCCAATGACTTATCCAATTCTCCAGGTATCAATGAGATAAATTATGCAGAAATGCAAGAGCCAACAGATAAGGTTGAGGATACCTCAAAATTGGTCCTTGTAAATAGTATTGACTGTGGTTCAGATACTAAACAAACTTGCTATCCAACAGATGAAAAGACAAATGTGCATACAGAACAGGAGAACACAGGATCTCTATGTTACAAACCTCCCTGTTTTCCAAGCTTGGATATTCCTTTCTTAAGCTGTGATCTTATACAACCTGGGGGTGATATGCAGCAAGAGTTTAGTCCCCTAGGTATCCGGCAGTTGATGATGTCTTCTATGAACTGTCTATCTCCTTTTAGGTTGTGGGACTCACCTTCTCGAAATGATAGTCCAGATGCTTTGTTCAAAAGTGCTGCTAAAACTTTTATAGGTACACCATCCATATTAAAGAAAAGACACCGAAGCCTTTTATCTCCGCTATCAGATAAAAGAATTGAGAAGAAACTTGACTTTGACATGGCATCAACATTGATAAAAGATTTTTCCTGTTTGGAAGTCATGTTTGACAACATTGAGACTCAGGAAGCAGTTTTGCTTTCTCCATCATCAATAGGAAAAAGGAACTCTTGTACCTCTGTTGAAGATAATAAAGAAAATTGTGGACAAGCTGTTAAAGAGGAACAAGTATTAGAGAAAAATAATTCTGCGAATTCAGATGACAAAAGGTCAAAACTAGATACAGGTGATAGTAATTCTCAAGAGAAGAGTTCACAGCCAGTTTCTGATGTTAAGTCTGAGATAAAAAATGATGTCAAAGCGACTACTGAGATTGTGCAACAACCTTCTGGAGTTCTGGTTAAGCATGATAGGAATAACCTGTTACCGCACTCTCCTGATCTAGTTGGTTTTAAATCAGACAGCGACCAAAGTTTATGTACTAGATCTCATAAAAGTCCATGCTCGGGTGTTAAGTCTCCTTATGGACAGGAAAAACTTAGAGTTGCTGTTGCTAGTTGTGTACAATCTTTCTGTTCATCAGCCCAAGGAGAGAATTCAGATATTCATGCTGGAAAAGATGGTGGTTTTGAAACATGTAGCATATTTGGTGGAACGCCTTTTAGGAGAAGTATTGAGTCACCTACAACATGGAAATCACCCTGGCTCTTCAACACTTTTCTGTCTAGCCCCAAGATTGATACTGAAATTACTATTGAGGATTTTGGGTATTTCATGAGCCCAGGTGGTAGGAGCTATGATGCAATCGAGTGGATGAAACAGATCAGCCCAATTGCTCGTGAGATTTTGGAAAATGAAACTCCTAAGGCATCATCAAAAAATGAATCTGGAAATCACAGTGATGGGGACCTGGAAAATAAGGATCCCCATGATCAGCCTGGGAACCATTGTCAGTTAGCTTCAAATGCTATCTTAAAGGTGGATACCTAA 4215 0.409 MALDEETTKKVIRQVEFYFSDSNLPTDVFMRKTVSESEDGMVSLALICSFNRMRKHLNLDDVKPDQVSDDTVSAVAQVLRNAASLKVSEDGKKVGRATELPKVEELIEQVEIRTLAASPFEYDLKLEDVETFFNQYAKVNSVRLPRHVGDKKLFCGTALVEFSSEEEVEKVLKQKLVYAGAELELKPKKDFDAERERELEAYEKSRPPVGSNRQNNSNEEESYPKGLIIAIKLKSISDEIPSKQNGADQQANDNNGISKTDEKPSSETTVGESDKKVSENVDTVEDNNEAKEEKDAVNEEKSQETGEKVPASAYKDNMDVVLREDLKSVFEKFGAVKYIDFKIGEESGYIRFDEAEAAQKARAAAVLSEKGGLVVKNFVAILDPVSGEAEKEYWTLLRGNQKVRHQNFKGNRGRGGGRHGGRGGKHARSRDNNGDSCVYSQKLAVGDFGETLVERIVVKSELKCAILIICQKTMESEKKVPARLDGGVQKGRALHGRITGPTRRSTKGQWTPEEDEILCQAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEIIIALVNKYGPKKWSNIAQHLPGRIGKQCRERWHNHLNPSINKEAWTQDEELALILAHEKYGNKWAELTKYLPGRTDNAIKNHWNSSVKKKLDSYKTSGLLARLQSSRLQCSRDENGPRGIEGGEVSQCSQESANARHFPSATEMSNAVFQTREKNRPNEESSLGKDYSPSQASCSEPYYVSLDDVEFIEQKQAQEPGNFTNGDCQLNLHALTDISSLDFVQESSRLQNDCIAPSESRDMLISNDECCRLLFSEATSDECFSSGDNKCVNMSDLSRCTSFSFQTSAAPSISSASDDRLLYTAEVNQLVGSVDQQFVCPTSAPPVPSASDGRLLYISGIDQLVGYEDQQFVSRSEDNVLYANDLSNSPGINEINYAEMQEPTDKVEDTSKLVLVNSIDCGSDTKQTCYPTDEKTNVHTEQENTGSLCYKPPCFPSLDIPFLSCDLIQPGGDMQQEFSPLGIRQLMMSSMNCLSPFRLWDSPSRNDSPDALFKSAAKTFIGTPSILKKRHRSLLSPLSDKRIEKKLDFDMASTLIKDFSCLEVMFDNIETQEAVLLSPSSIGKRNSCTSVEDNKENCGQAVKEEQVLEKNNSANSDDKRSKLDTGDSNSQEKSSQPVSDVKSEIKNDVKATTEIVQQPSGVLVKHDRNNLLPHSPDLVGFKSDSDQSLCTRSHKSPCSGVKSPYGQEKLRVAVASCVQSFCSSAQGENSDIHAGKDGGFETCSIFGGTPFRRSIESPTTWKSPWLFNTFLSSPKIDTEITIEDFGYFMSPGGRSYDAIEWMKQISPIAREILENETPKASSKNESGNHSDGDLENKDPHDQPGNHCQLASNAILKVDT 1404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0405 1404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 610 660 IPR017930 -
Lal21g0405 1404 ProSiteProfiles xRRM domain profile. 302 426 IPR014886 GO:0003723
Lal21g0405 1404 Gene3D - 106 203 IPR012677 -
Lal21g0405 1404 SMART rrm1_1 312 376 IPR000504 GO:0003723
Lal21g0405 1404 SMART rrm1_1 114 186 IPR000504 GO:0003723
Lal21g0405 1404 Pfam La domain 11 81 IPR006630 -
Lal21g0405 1404 ProSiteProfiles Myb-like domain profile. 554 605 IPR001005 -
Lal21g0405 1404 MobiDBLite consensus disorder prediction 208 222 - -
Lal21g0405 1404 Pfam Myb-like DNA-binding domain 562 620 - -
Lal21g0405 1404 PRINTS Lupus La protein signature 14 31 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Lal21g0405 1404 PRINTS Lupus La protein signature 40 55 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Lal21g0405 1404 PRINTS Lupus La protein signature 154 172 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Lal21g0405 1404 Gene3D - 612 682 - -
Lal21g0405 1404 Gene3D - 506 558 - -
Lal21g0405 1404 Gene3D - 283 412 IPR012677 -
Lal21g0405 1404 MobiDBLite consensus disorder prediction 192 222 - -
Lal21g0405 1404 PANTHER MYB PROTEIN-RELATED 807 1399 - -
Lal21g0405 1404 PANTHER MYB PROTEIN-RELATED 487 681 - -
Lal21g0405 1404 MobiDBLite consensus disorder prediction 406 434 - -
Lal21g0405 1404 SUPERFAMILY "Winged helix" DNA-binding domain 4 100 IPR036390 -
Lal21g0405 1404 PANTHER TRANSCRIPTION REPRESSOR MYB5 807 1399 - -
Lal21g0405 1404 PANTHER TRANSCRIPTION REPRESSOR MYB5 487 681 - -
Lal21g0405 1404 SUPERFAMILY RNA-binding domain, RBD 105 190 IPR035979 GO:0003676
Lal21g0405 1404 MobiDBLite consensus disorder prediction 694 721 - -
Lal21g0405 1404 Pfam Myb-like DNA-binding domain 507 553 IPR001005 -
Lal21g0405 1404 MobiDBLite consensus disorder prediction 1155 1172 - -
Lal21g0405 1404 Pfam RNA binding motif 321 412 IPR014886 GO:0003723
Lal21g0405 1404 Gene3D - 1 101 IPR036388 -
Lal21g0405 1404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 174 IPR000504 GO:0003723
Lal21g0405 1404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 502 553 IPR017930 -
Lal21g0405 1404 MobiDBLite consensus disorder prediction 679 742 - -
Lal21g0405 1404 MobiDBLite consensus disorder prediction 241 311 - -
Lal21g0405 1404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 554 609 IPR017930 -
Lal21g0405 1404 SMART sant 610 658 IPR001005 -
Lal21g0405 1404 SMART sant 558 607 IPR001005 -
Lal21g0405 1404 SMART sant 506 555 IPR001005 -
Lal21g0405 1404 MobiDBLite consensus disorder prediction 1359 1404 - -
Lal21g0405 1404 ProSiteProfiles Myb-like domain profile. 502 553 IPR001005 -
Lal21g0405 1404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 198 IPR000504 GO:0003723
Lal21g0405 1404 CDD SANT 613 653 IPR001005 -
Lal21g0405 1404 CDD LA_like_plant 7 96 - -
Lal21g0405 1404 MobiDBLite consensus disorder prediction 1149 1190 - -
Lal21g0405 1404 SMART la 5 97 IPR006630 -
Lal21g0405 1404 ProSiteProfiles Myb-like domain profile. 606 656 IPR001005 -
Lal21g0405 1404 CDD SANT 510 553 IPR001005 -
Lal21g0405 1404 SUPERFAMILY RNA-binding domain, RBD 323 408 IPR035979 GO:0003676
Lal21g0405 1404 Coils Coil 280 307 - -
Lal21g0405 1404 MobiDBLite consensus disorder prediction 265 306 - -
Lal21g0405 1404 MobiDBLite consensus disorder prediction 1371 1387 - -
Lal21g0405 1404 CDD SANT 561 605 IPR001005 -
Lal21g0405 1404 SUPERFAMILY Homeodomain-like 508 563 IPR009057 -
Lal21g0405 1404 MobiDBLite consensus disorder prediction 241 264 - -
Lal21g0405 1404 SUPERFAMILY Homeodomain-like 556 652 IPR009057 -
Lal21g0405 1404 MobiDBLite consensus disorder prediction 406 425 - -
Lal21g0405 1404 Gene3D - 559 610 - -
Lal21g0405 1404 MobiDBLite consensus disorder prediction 1173 1187 - -
Lal21g0405 1404 ProSiteProfiles La-type HTH domain profile. 1 104 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0405 Lal-Chr21 2801484 2813229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0405 474 1399 MYB Transcription Factor Family AT4G32730 40.100 0.0 597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal21g0405 RRM_3 2.7e-18 CL0221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0405 - K09420 gmx:100811335 1199.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0405 21 2801484 2813229 Lal21g0405 21 2801484 2813229 ECH
Lal21g0405 21 2801484 2813229 Lal4g0274 4 1757014 1765373 LSH
Lal8g1513 8 19435167 19442813 Lal21g0405 21 2801484 2813229 PCT
Lal25g1110 25 14480383 14488224 Lal21g0405 21 2801484 2813229 PCT
Lal21g0405 21 2801484 2813229 Lal8g1513 8 19435167 19442813 PCT
Lal21g0405 21 2801484 2813229 Lal25g1110 25 14480383 14488224 PCT