Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0393 ATGGAATCTCCGCCGCAATCTCTAACACCGTCACCAACGGTTTTTCCCGGCTTCTTCAAACGGATGCCGGAATTTGATCTCTATGATGATCAGTGGTGTAACGAACTTACAAACGACCTTGACCACATGAAACCTGATTACTTGCGCTTCGGCACCGATGCATTGATCTACGACGTTTGCTCCGATGACCTCACTCCCGCCGCCGCTGCTGCCACCCATAACATTACGGATCCAGTGACTGCATATTCAACCTGTGGAGATACCATTATCTGTTCCCAAAATGTCACTCCCATGAATTCAACCATCTCTGCTACTATTGATTCTCAAGCATCTAATTGTGGCACTGTTGGAAGCCCAGTTTCAGCAAATAAACCAAATAGCAGTGAGAATCAAACCAAAGGAGCAACAAGTGGTTCATCTGAGCAGTCTTATGAAGATGATGAATTTGGTCCTTGTGAACAAAGCACAAATCCTCTTGATGTGAAGCGCCATAGAAGGAAGGTTTCTAATCGCGAGTCTGCAAGGAGATCAAGAAGAAGAAAACAAGCTGAGTTGGGTGACCTTGAGTTGCAGGTTGACAAAATGAAACTGGAAAATGCAACCCTATACAAGCAGTTTACGCATGCAAGTCAACAATTCCGTGATGCTGATACAAATAACCGAGTGCTAAAATCAGATGTAGAAGCTTTGAGAGCTAAGGTTAAGTTAGCTGAGGATATGGTGACTCGGAGCAGTTTCACCTTAAACAACCAATTTCTTCAGACTCAGTCTCAAATGAGCACGGCTAATCTGCGCCGTATGGCACATGTCTCGCCAACCATCACTGTCCATGGAAATAATGCCTCATATGGTGGTGTCACAATTGGACAGAATTCTACACATGGGCTTGGAAACTTGGATATAACTAATTACAACAATGCCAACAATGGAGTTTTTAGTGATGCTGTTAGTTCTGTAACTATGTGGCAGTAA 972 0.4383 MESPPQSLTPSPTVFPGFFKRMPEFDLYDDQWCNELTNDLDHMKPDYLRFGTDALIYDVCSDDLTPAAAAATHNITDPVTAYSTCGDTIICSQNVTPMNSTISATIDSQASNCGTVGSPVSANKPNSSENQTKGATSGSSEQSYEDDEFGPCEQSTNPLDVKRHRRKVSNRESARRSRRRKQAELGDLELQVDKMKLENATLYKQFTHASQQFRDADTNNRVLKSDVEALRAKVKLAEDMVTRSSFTLNNQFLQTQSQMSTANLRRMAHVSPTITVHGNNASYGGVTIGQNSTHGLGNLDITNYNNANNGVFSDAVSSVTMWQ 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0393 323 SMART brlzneu 158 222 IPR004827 GO:0003700|GO:0006355
Lal21g0393 323 MobiDBLite consensus disorder prediction 116 144 - -
Lal21g0393 323 PANTHER BZIP TRANSCRIPTION FACTOR 67 322 - -
Lal21g0393 323 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 165 180 IPR004827 GO:0003700|GO:0006355
Lal21g0393 323 MobiDBLite consensus disorder prediction 116 182 - -
Lal21g0393 323 Gene3D - 161 217 - -
Lal21g0393 323 Pfam Basic leucine-zipper C terminal 229 284 IPR020983 -
Lal21g0393 323 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 160 223 IPR004827 GO:0003700|GO:0006355
Lal21g0393 323 Coils Coil 220 240 - -
Lal21g0393 323 Coils Coil 171 205 - -
Lal21g0393 323 PANTHER BASIC LEUCINE ZIPPER 63 67 322 - -
Lal21g0393 323 SUPERFAMILY Leucine zipper domain 162 212 IPR046347 GO:0003700|GO:0006355
Lal21g0393 323 Pfam bZIP transcription factor 161 206 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0393 Lal-Chr21 2673389 2677886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0393 107 322 bZIP Transcription Factor Family AT5G24800 50.000 2.15e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lal21g0393 bZIP_C 0.00014 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0393 K25784 - gmx:780555 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0393 21 2673389 2677886 Lal21g0393 21 2673389 2677886 ECH
Lal17g0287 17 1787576 1790659 Lal21g0393 21 2673389 2677886 LSH