Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0386 ATGCAACAGAGGGCAAAGTTGCTTCAACAACAACAACAACAAGCTCTGATGCAACAAGCTTTGCTTCAACAACAGCAGATGTATCACCCTGGCATGATCGCCGCTGCTATGTCTCAGATGGATCCTGTTCCAAGTGGGAATCTGCCTCCTGGTTTTGACACTTCTGCATGCCGTAGTGTTTATGTAGGAAATATTAATGTAAATGTCACGGATCAGCTCCTCGCAGAAGTTTTTCAGAGTGCTGGTCCTCTTGCTGGATGCAAGCTCATAAGAAAAGAAAAGGTTGCTTTAGGTCCTGTTTTATGTGTTATATGTCAATTGGCAGTCATCAGTCCTGCTGTGGGGAGCACAGTAAAATCCTCTTACGGTTTTGTGGACTACCATGATCGGGCATCTGCAGCCCTTGCTATAATGACATTGCACGGACGGCAACTATATGGTCAAGCACTTAAGGTGAACTGGGCATATGCCAATAGCAGTAGGGAAGATACTTCAGGGCACTTCAATGTATTTATCGGTGATTTGAGTCCAGAGGTCACTGATGCAATTTTATTTGCATGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAGGGTTATGTGGGATCACAAAACTGGTCGCTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCCCAAAGTGCCATCAATGATATGACAGGTAAATGGCTGGGAAATAGGCAGATACGATGCAATTGGGCAACTAAGGGTGCTGGTACCAGCTCCGGCGAAGAGAAGAACAGTGACAACCAAAATGCTGTTGTGCTTACAAATGGATCTTCAGATGGAGGTCAAGAGAATAACAATGAGGACTCTCCTGAAAACAATCCTGCATACACCACAGTTTATGTTGGCAACCTTCCCCATGATGTAACTCAAACTGAACTTCATTTCCAGTTCCATGCACTGGGTGCTGGGGTTATTGAGGAGGTCCGAATTCAGAGGGATAAAGGTTTTGGATTTGTCAGGTACAACACTCATGATGAAGCAGCATTGGCCATTCAGATTGGTAATGGACGAATAGTTCGTGGGAAGAATATGAAGGTGAGAAGGCTTTCACTTGTTGCTTATGATCAACAAATTAATTGCCATTTCAGTATTAGGGTGATATTTGCCCTATGCCGATATTCCATTGCCTATGATTGTATTAGGTGTTCATGGGGTAGCAAGCCAACTCCTCCCGGAACAGCTTCAAATCCCCTACCTCCTCCTGCTCCTGCTCAACCATATCAAATGCTTCCCACTGCTGGGATGAACCAAAGCTATTCTCCGGCTGAGTTGTTGGCTTACCAGCGCCAACTTGCCTTGAGTCAAGCTGCTGTATCCGGCCTTTCTGGTCAAGCCCTTCTACAAATGACCGGACAACATGGCCTAGCTCCTGCTTCAATGGGCATAAACTTGGGGGCATCTCAAGCCATGTATGACGGATATACTGGTAATTCATCAAGACAGCAGCTTATGTACTATCGTTGA 1503 0.4511 MQQRAKLLQQQQQQALMQQALLQQQQMYHPGMIAAAMSQMDPVPSGNLPPGFDTSACRSVYVGNINVNVTDQLLAEVFQSAGPLAGCKLIRKEKVALGPVLCVICQLAVISPAVGSTVKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNVFIGDLSPEVTDAILFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGTSSGEEKNSDNQNAVVLTNGSSDGGQENNNEDSPENNPAYTTVYVGNLPHDVTQTELHFQFHALGAGVIEEVRIQRDKGFGFVRYNTHDEAALAIQIGNGRIVRGKNMKVRRLSLVAYDQQINCHFSIRVIFALCRYSIAYDCIRCSWGSKPTPPGTASNPLPPPAPAQPYQMLPTAGMNQSYSPAELLAYQRQLALSQAAVSGLSGQALLQMTGQHGLAPASMGINLGASQAMYDGYTGNSSRQQLMYYR 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0386 500 CDD RRM2_PUB1 169 243 - -
Lal21g0386 500 SUPERFAMILY RNA-binding domain, RBD 276 360 IPR035979 GO:0003676
Lal21g0386 500 Gene3D - 268 364 IPR012677 -
Lal21g0386 500 Gene3D - 1 166 IPR012677 -
Lal21g0386 500 SUPERFAMILY RNA-binding domain, RBD 41 161 IPR035979 GO:0003676
Lal21g0386 500 SMART rrm1_1 59 153 IPR000504 GO:0003723
Lal21g0386 500 SMART rrm1_1 169 242 IPR000504 GO:0003723
Lal21g0386 500 SMART rrm1_1 291 360 IPR000504 GO:0003723
Lal21g0386 500 SUPERFAMILY RNA-binding domain, RBD 162 271 IPR035979 GO:0003676
Lal21g0386 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 170 240 IPR000504 GO:0003723
Lal21g0386 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 357 IPR000504 GO:0003723
Lal21g0386 500 Gene3D - 167 247 IPR012677 -
Lal21g0386 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 157 IPR000504 GO:0003723
Lal21g0386 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 364 IPR000504 GO:0003723
Lal21g0386 500 CDD RRM3_TIA1_like 290 360 - -
Lal21g0386 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 168 246 IPR000504 GO:0003723
Lal21g0386 500 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 119 359 - -
Lal21g0386 500 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 12 99 - -
Lal21g0386 500 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 391 497 - -
Lal21g0386 500 MobiDBLite consensus disorder prediction 246 288 - -
Lal21g0386 500 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 12 99 - -
Lal21g0386 500 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 119 359 - -
Lal21g0386 500 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 391 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0386 Lal-Chr21 2621159 2628076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0386 50 371 Eukaryotic Initiation Factors Gene Family AT4G34110 25.369 1.61e-18 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0386 K13201 - gmx:100777108 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0386 21 2621159 2628076 Lal21g0386 21 2621159 2628076 ECH
Lal17g0280 17 1739288 1744939 Lal21g0386 21 2621159 2628076 LSH