Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0377 ATGATGGATGAATATTCTGGTAAAAGAACTATTGGCGGGGTGGTAGTTCCTAGAAAGGGGATGGGCCATGTCTTTAGAGATACTGCTAATACTAGAGATCGAAATGGTCAAGCTTGCAGCCGCCTTGGTTGCTGTAGCAGAGTCAACTCTCCTAAAGGTGCTCAAATCGGCTCTTCTGAGAAAGGTAAATCTCTGAGACCTTCAACCCGACCCTCTTCTAGTGGCAAGGAAGCAATGGGAAGTTCCTCTAGAACTTTCACAGGGACTAGTAACCCAGGAAAAACCTTTCTAATGCCTCGGAAAACTTTGTCCTCTCAGTCAGAGGCAGATTCATCTGAAACAAGTAGTGTACAGGATGAACCAGAACCTTCAAACCTTGTCCCTCCACCTGAAAATATCAAGCAAGGGCTTCAATCGGAAGTCGAAAATTCAGACTCTAGTGATGTCATGCCAATGGAAGCAGGGAGCTCTAGTGTAGCATCTAATACAAGATCTCGGAGGAATTTTCATCCAAAGCCTGGATTGCGTGCTCAAGAAGTTAAAAGCACTGGTCCCGTTACACGTGCTGGTAACAATAGGTATGGGTTGAGGAACCTCAGATGCAACTCTATATCTGATGTCATCCCAGCAGGTAGCTGTTCATCATCTGATTCAACCCTTAACAGAAGCAAGGATATGATAAAAAGGAGAAATTTTGAAGGAGAAAGCAGTTCCAGTGCTAGAGGGAAGAACATTAGTGGGCCTTCATTTGAGGGACGGAATTCTGCTTCGAGAAATGGAATATCTATATCTGATTCAAGAAGATCCAGAAATACTCCTTCCCACAGGGACAGGCCAGAGAGCAATGTAACATCAGTTAGGACACGAAGATCAGTGAGCGGTCAAGCCAGAGGAAGGTTATCCAGCGAAGGAAATGCTAATCCTGTGGCACCCAATGACTCTCTTTCAACGACTACTCCTTTGCCACGTTCTGGTGGTCTTAATGCTCCTTGCGTATCACATCATTCTTCTGTGGAGGCTGCTTTAAGTCGTCCAGGCTCTTACATTATGCCAGTTACTGGCAGTGAGGAGTTATATGGTGTTATGCCCAGGTCTCCTTCCGAATATGGCATAACTCGTTCTGTAATAAACCGGGAGGGCTTTCGACGCCGCTACAACATGGATGGTATTGCAGAGGTATTGTTGGCACTTGAGAGGCTTGAACAAGATGTTGAGCTAACACACGAGCAAATTCTTATGCTGGAGTCCAACTTGTTCCTTAATGGACTGAGTTTCCATGATCAGCATAGAGACATGCGGCTGGATATTGATAACATGTCATATGAGGAACTGTTAGCTTTGGAAGAGAGGATTGGTACTGTGAGCACTGCTCTCACAGAGGAAGCACTATTAGAATGTCTGAAGAGAAGTTTCTATCAACCCTCACCCTCAGATGATGAAGCTGAGCGTTTCAATGAGCATAAGGATGATACCAATTGCAGCATCTGCCAGGAAGAATATTTGGTTGCGGATGAAGTAGGGAGTCTGAAATGCGAGCATAAGTATCATGCAATCTGCATACAACAATGGCTGAGGCTGAAGAACTGGTGCCCGATTTGTAAAGCACCAGTAGGGCCTTCAAATTCATCATCTTCATCTCATTAA 1644 0.4489 MMDEYSGKRTIGGVVVPRKGMGHVFRDTANTRDRNGQACSRLGCCSRVNSPKGAQIGSSEKGKSLRPSTRPSSSGKEAMGSSSRTFTGTSNPGKTFLMPRKTLSSQSEADSSETSSVQDEPEPSNLVPPPENIKQGLQSEVENSDSSDVMPMEAGSSSVASNTRSRRNFHPKPGLRAQEVKSTGPVTRAGNNRYGLRNLRCNSISDVIPAGSCSSSDSTLNRSKDMIKRRNFEGESSSSARGKNISGPSFEGRNSASRNGISISDSRRSRNTPSHRDRPESNVTSVRTRRSVSGQARGRLSSEGNANPVAPNDSLSTTTPLPRSGGLNAPCVSHHSSVEAALSRPGSYIMPVTGSEELYGVMPRSPSEYGITRSVINREGFRRRYNMDGIAEVLLALERLEQDVELTHEQILMLESNLFLNGLSFHDQHRDMRLDIDNMSYEELLALEERIGTVSTALTEEALLECLKRSFYQPSPSDDEAERFNEHKDDTNCSICQEEYLVADEVGSLKCEHKYHAICIQQWLRLKNWCPICKAPVGPSNSSSSSH 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0377 547 MobiDBLite consensus disorder prediction 237 268 - -
Lal21g0377 547 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 2 537 - -
Lal21g0377 547 MobiDBLite consensus disorder prediction 230 330 - -
Lal21g0377 547 Coils Coil 390 417 - -
Lal21g0377 547 SUPERFAMILY RING/U-box 487 539 - -
Lal21g0377 547 ProSiteProfiles Zinc finger RING-type profile. 493 534 IPR001841 -
Lal21g0377 547 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 2 537 IPR045191 GO:0061630
Lal21g0377 547 MobiDBLite consensus disorder prediction 25 193 - -
Lal21g0377 547 MobiDBLite consensus disorder prediction 51 122 - -
Lal21g0377 547 MobiDBLite consensus disorder prediction 269 284 - -
Lal21g0377 547 Pfam Ring finger domain 492 534 IPR001841 -
Lal21g0377 547 MobiDBLite consensus disorder prediction 136 168 - -
Lal21g0377 547 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 477 546 IPR013083 -
Lal21g0377 547 MobiDBLite consensus disorder prediction 285 324 - -
Lal21g0377 547 SMART ring_2 493 533 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0377 Lal-Chr21 2563289 2567054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0377 390 534 C3H Transcription Factor Family AT2G15530 45.205 2.19e-36 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0377 - - gmx:100787213 764.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0274 17 1708657 1712353 Lal21g0377 21 2563289 2567054 LSH
Lal21g0377 21 2563289 2567054 Lal4g0255 4 1646651 1651072 LSH