Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0375 ATGGGTGGTATTAGTCTTGAAGAGATAAAAAACGAGAACGTTGATCTGGAACGGATTCCAGTGGATGAAGTGTTTGAACAACTAAAATGTTCGAGAGAAGGTCTAACATCAGACGAAGGAGCCAGCCGGCTTCAAGTTTTTGGTCCAAACAAATTGGAAGAGAAAAAGGAAAGCAAACTTTTGAAGTTTTTGGGTTTTATGTGGAACCCTTTATCATGGGTCATGGAAGCAGCAGCTATCATGGCTATTGCTTTGGCTAATGGTGATGGAAGGCCCCCAGATTGGCAAGATTTTGTGGGTATCATTGTTCTCTTGGTCATTAACTCCACAATCAGTTTTATTGAGGAAAACAATGCGGGCAATGCCGCTGCTGCACTCATGGCCGGATTAGCTCCCAAGACCAAGATATTGAACCTCTGCAACTGCAAAGAGGATGTTAGGAAGCGGGCTCACGCTACTATTGATAAGTTTGCTGAGCGTGGACTTCGGTCTTTGGGTGTTGCTAGACAGGAAGTACCCGAGAGAACAAAAGAGAGTCTTGGTGCACCATGGCAATTTGTTGGTCTGCTACCACTGTTTGATCCTCCTAGACATGATAGTGCTGAAACCATCACAAGAGCTCTTAACCTTGGTGTTAATGTTAAGATGATTACCGGGGATCAACTTGCTATTGCCAAGGAAACTGGACGAAGGCTTGGGATGGGAACAAACATGTACCCATCTTCATCTTTGCTTGGCCAACACAAAGATCCTGCTATTGAATCTCTCCCTGTTGATGAGCTGATTGAGAAGGCTGATGGATTCGCTGGAGTATTTCCTGAACACAAATATGAAATTGTTAAGAGACTACAAGACAGGAAGCATATATGTGGAATGACAGGTGATGGTGTCAACGATGCCCCTGCATTAAAGAGAGCAGATATTGGTATTGCCGTCGCTGATGCTACAGATGCTGCTAGAAGTGCTTCTGATATTGTCCTCACTGAACCGGGTCTAAGTGTCATTATCAGTGCAGTGCTCACCAGCAGGGCAATTTTCCAAAGGATGAAGAATTATACTATCTATGCTGTGTCAATCACCATTCGTATTGTGTTTGGTTTCATGTTTATTGCCTTGATCTGGAGGTTCGATTTTGCACCCTTTATGGTGTTGATTATTGCCATATTAAATGATGGTACCATTATGACAATATCCAAGGATCGAGTGAAACCATCACCAATGCCCGATAGTTGGAAACTGAAGGAGATATTTGCTACTGGTGTTGTGCTAGGTAGTTACATGGCACTAATGACAGTGATATTTTTCTGGCTCATGAAGGATACTGACTTCTTCTCGGACAAATTTGGTGTTAGGTCTCTGAGAAATAACCCTGCAGAAATGATGGCAGCCCTGTACCTACAAGTCAGTATTATAAGCCAGGCCCTTATTTTCGTCACTAGGTCCCGCAGCTGGTCCTATGTTGAAAGACCTGGTTTTCTCCTAATGGGTGCTTTTCTGATTGCTCAGCTGGTGGCAACTTTTCTAGCAGTATATGCTAATTGGAGTTTTGCAAGAATTAAGGGAATGGGATGGGGTTGGGCTGGTGTAATTTGGTTGTACAGTTTGGTGACATATGTCCCTCTTGATATATTGAAATTCGCGATCCGTTATGCTCAAAGTGGTAAGGCCTGGAATAACCTTTTGGAGAACAAGACTGCATTCACTACCAAGAAAGATTATGGCAAAGAAGAGAGAGAAGCACAATGGGCAACTGCACAAAGGACTCTTCATGGTCTTCAACCACCAGAAACAACCAACATTTTCAATGACAAGAATAGCTACAGGGAGCTTTCAGAGATTGCTGAGCAAGCAAAAAGACGCGCTGAAGTTGCAAGGCTTAGGGAACTTCATACTCTAAAGGGACATGTTGAATCAGTGGTGAAGCTCAAGGGACTTGACATTGATACAATCCAGCAACATTACACTGTATAA 1971 0.4318 MGGISLEEIKNENVDLERIPVDEVFEQLKCSREGLTSDEGASRLQVFGPNKLEEKKESKLLKFLGFMWNPLSWVMEAAAIMAIALANGDGRPPDWQDFVGIIVLLVINSTISFIEENNAGNAAAALMAGLAPKTKILNLCNCKEDVRKRAHATIDKFAERGLRSLGVARQEVPERTKESLGAPWQFVGLLPLFDPPRHDSAETITRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQHKDPAIESLPVDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKRADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWRFDFAPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLKEIFATGVVLGSYMALMTVIFFWLMKDTDFFSDKFGVRSLRNNPAEMMAALYLQVSIISQALIFVTRSRSWSYVERPGFLLMGAFLIAQLVATFLAVYANWSFARIKGMGWGWAGVIWLYSLVTYVPLDILKFAIRYAQSGKAWNNLLENKTAFTTKKDYGKEEREAQWATAQRTLHGLQPPETTNIFNDKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0375 656 Gene3D - 138 193 IPR023299 GO:0000166
Lal21g0375 656 Gene3D - 605 656 - -
Lal21g0375 656 PANTHER PLASMA MEMBRANE ATPASE 1 137 - -
Lal21g0375 656 PANTHER PLASMA MEMBRANE ATPASE 135 636 - -
Lal21g0375 656 PRINTS H+-transporting ATPase (proton pump) signature 150 168 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal21g0375 656 PRINTS H+-transporting ATPase (proton pump) signature 265 281 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal21g0375 656 PRINTS H+-transporting ATPase (proton pump) signature 293 309 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal21g0375 656 PRINTS H+-transporting ATPase (proton pump) signature 324 349 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal21g0375 656 PRINTS H+-transporting ATPase (proton pump) signature 465 486 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal21g0375 656 SUPERFAMILY HAD-like 185 339 IPR036412 -
Lal21g0375 656 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 268 383 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal21g0375 656 Pfam Cation transporter/ATPase, N-terminus 19 81 IPR004014 -
Lal21g0375 656 PRINTS P-type cation-transporting ATPase superfamily signature 188 199 - -
Lal21g0375 656 PRINTS P-type cation-transporting ATPase superfamily signature 210 220 - -
Lal21g0375 656 PRINTS P-type cation-transporting ATPase superfamily signature 293 312 - -
Lal21g0375 656 PRINTS P-type cation-transporting ATPase superfamily signature 316 328 - -
Lal21g0375 656 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 551 IPR023298 -
Lal21g0375 656 Gene3D - 66 137 - -
Lal21g0375 656 Gene3D - 331 520 - -
Lal21g0375 656 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 136 199 IPR023299 GO:0000166
Lal21g0375 656 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Lal21g0375 656 Coils Coil 607 627 - -
Lal21g0375 656 Pfam haloacid dehalogenase-like hydrolase 186 307 - -
Lal21g0375 656 Gene3D - 194 330 IPR023214 -
Lal21g0375 656 PANTHER CALCIUM-TRANSPORTING ATPASE 135 636 - -
Lal21g0375 656 PANTHER CALCIUM-TRANSPORTING ATPASE 1 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0375 Lal-Chr21 2536758 2543743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0375 131 656 Primary Pumps ATPases AT2G24520 85.171 0.0 938
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0375 K01535 - gmx:547525 967.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0270 17 1683793 1689009 Lal21g0375 21 2536758 2543743 LSH
Lal21g0375 21 2536758 2543743 Lal4g0253 4 1632116 1637767 LSH