Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0355 ATGTCTCAAACCAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGACTACCTGGTAAAGAGGGATTTGAAGGCTTCTGCTCAAGCTTTTCAAGCTGAAGGAAAAGTGTCATCGGATCCTGTTGCTATTGATGCCCCCGGTGGTTTTTTGTTCGAGTGGTGGTCAGTTTTCTGGGACATATTTATTGCCAGGACTAATGAGAAGCACTCAGAGGTTGCAGCATCTTATATTGAGACACAATTAATTAAGGCAAGAGAGCAACAACAGCAGCAGCAGCCACAACCCCAGCAGTCACAACATCAACAGCAGCAGCAACACATGCAGATGCAACAGCTCTTGATGCAAAGGCACGCACAGCAACAGCAGCAACAACAACAACAGCAGCAACAGCAGCAGCAGCAACAACAGCAGCAGCAACAGCAACAGCAGCAACATCAGCAGCAACAACAACAGCAGCAACATCAGCAGCAGCAACAACAGCAGCAGCAGCAACAACAACAACAGCAGCAGCAGCAGCAAAGCAGAGATAGAGCTCACCTCTTAAATGGCAGTACAAATGGGTTAGTTGGAAACTCTGGAACTGCAAATGCATTAGCAACAAAGATGTACGAGGAAAGGTTAAAATTGCCCCTTCAGAGGGATTCTTTGGATGACACAGCAATGAAGCAAAGATTTGGTGAGAACATGGGCCAGCTGTTGGATCCAAGTCATGCCTCAATATTGAAGTCAGCTGCAGCTTCTGGCCAGCCTTCAGGACAAGCTATGCATGGTGCTGCTGGTGGGATGTCTCCACAAGTCCAAGCTCGTAATCAGCAATTGCCGGGGTCTACTCCAGATATAAAGAGTGAGATTAATCCTGTTTTAAATCCCAGAGCTGCGGGTCCTGAAGGATCATTGCTAGCAATTCCTGGATCAAATCAAGGTAGCAGCAATTTGACTCTGAAAGGGTGGCCACTCACAGGTTTGGAGCAACTACGCTCTGGTCTACTCCAGCAACAAAAACCTTTCATTCAGACTCCTCAGCCTTTTCATCAACTTCAAATGTTGACACCTCAGCAACAGCTTATGTTTGCCCAACAAAATTTAGCATCACCATCTGCCAGTGATGAAAGTAGAAGACTCAGAATGCTCTTGAATAACAGGAGTATGAGCCTAAATAAGGATGGTCTTTCAAATTCTGTTGGTGATGTAGTGTCAAATATTGGATCACCTCTTCAAGGTGGTGCCCCTCCGTTTGGTCGTGGAGATACAGATATGCTAATGAGGTTGAAATTAGCTCAGTTACAGCAGCAGCAGCAGCAACAGCCAAACACTAATCCACAGCAGCAGCAGCAGCAACTTCAACAGCCTGCTCTTTCGAATCAACAATCTCAGTCTTCAAATCATAACATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGGCACCGTGGATGGTAGCATGTCAAACTCCTTTAGAGGAAATGATCAGGTTTCAAAAAACCAGATGGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCAGGTCCTGCCAATAGTACGGGAACAGCAAATACAACTGGCCCATCACCAAGTTCCGCACCCTCAACTCCGTCAACTCATACGCCTGGAGATGTGATATCAATGCCTGGCTTGCCTCATAGTGGCAGTTCTTCAAAGCCTTTAATGATGTTTAGTACTGATGGCCCTGGAACTCTTACATCACCTTCCAACCAGCTGGCTGATGTGGATCGCTTTGTGGATGATGGATCACTTGATGAAAATGTTGAGTCTTTTTTATCCCATGATGATACAGACCCTAGAGATACAGTTGGTCGTTGTATGGATGTAAGCAAAGGTTTCTCATTTTCTGAAATGAACTCTGTACGTGCAAGCACAAACAAAGTTGTCTGTTGCCACTTTTCATCTGATGGGAAATTGCTTGCAAGTGGTGGCCATGACAAAAAGGCTGTTTTATGGCACACAGATTCTCTAAAGCAAAAAGCTACTCTTGAAGAGCATTCATCTTTGATTACTGATGTCCGTTTCAGTCCAAGCATGCCTCGGCTGGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGAGAATCCTGGGTATTCGCTGCGGAATTTTACAGGACATTCTGCAGCTGTTATGTCACTTGATTTTCATCCAAATAGAGATGACCTTATCTGCTCTTGTGATGGTGATGGTGAAATAAGATATTGGAGTATAAACAATGGCAGTTGTACTCGAGTCTCCAAGGGTGGTACTATCCAGATGAGATTCCAGCCTCGTCTAGGGAGGCACCTTGCTGCAGCTGCAGAGAATGTTGTCTCTATATTTGATGTTGAGACACAAGCATGCCTATATTCATTAAAGGGACACACGAAGCCAATACATTCTGTATGTTGGGACCCTTCTGGGGAGTTGCTAGCATCTGTGAGTGAAGACTCTGTCAGGGTTTGGACTCTTGGAACAGGGAGTGAAGGGGAATGTGTACATGAGCTCAGCTGCAATGGTAGTAAGTTTCACTCATGTGTTTTCCACCCAACATATCCTTCATTGCTGGTTATTGGTTGCTACCAGTCATTGGAGCTATGGAACATGAGTGAGAACGAGACAATGACTATTTCTGCTCATGAAGGTCTTATTGCTGCATTGTCTGCTTCAACTGTAAATGGTCTAGTTGCTTCTGCCAGTCATGACAAGTTTATCAAGCTCTGGAAGTGA 2730 0.4505 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQPQPQQSQHQQQQQHMQMQQLLMQRHAQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQQQHQQQQQQQQQQQQQQQQQQQSRDRAHLLNGSTNGLVGNSGTANALATKMYEERLKLPLQRDSLDDTAMKQRFGENMGQLLDPSHASILKSAAASGQPSGQAMHGAAGGMSPQVQARNQQLPGSTPDIKSEINPVLNPRAAGPEGSLLAIPGSNQGSSNLTLKGWPLTGLEQLRSGLLQQQKPFIQTPQPFHQLQMLTPQQQLMFAQQNLASPSASDESRRLRMLLNNRSMSLNKDGLSNSVGDVVSNIGSPLQGGAPPFGRGDTDMLMRLKLAQLQQQQQQQPNTNPQQQQQQLQQPALSNQQSQSSNHNMHQQDKVGGGGGSGTVDGSMSNSFRGNDQVSKNQMGRKRKQPVSSSGPANSTGTANTTGPSPSSAPSTPSTHTPGDVISMPGLPHSGSSSKPLMMFSTDGPGTLTSPSNQLADVDRFVDDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFSFSEMNSVRASTNKVVCCHFSSDGKLLASGGHDKKAVLWHTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVENPGYSLRNFTGHSAAVMSLDFHPNRDDLICSCDGDGEIRYWSINNGSCTRVSKGGTIQMRFQPRLGRHLAAAAENVVSIFDVETQACLYSLKGHTKPIHSVCWDPSGELLASVSEDSVRVWTLGTGSEGECVHELSCNGSKFHSCVFHPTYPSLLVIGCYQSLELWNMSENETMTISAHEGLIAALSASTVNGLVASASHDKFIKLWK 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0355 909 Coils Coil 111 176 - -
Lal21g0355 909 MobiDBLite consensus disorder prediction 266 285 - -
Lal21g0355 909 CDD WD40 625 909 - -
Lal21g0355 909 ProSiteProfiles Trp-Asp (WD) repeats profile. 710 752 IPR001680 GO:0005515
Lal21g0355 909 SUPERFAMILY WD40 repeat-like 620 909 IPR036322 GO:0005515
Lal21g0355 909 Gene3D - 760 909 IPR015943 GO:0005515
Lal21g0355 909 ProSiteProfiles Trp-Asp (WD) repeats profile. 667 702 IPR001680 GO:0005515
Lal21g0355 909 ProSitePatterns Trp-Asp (WD) repeats signature. 686 700 IPR019775 -
Lal21g0355 909 ProSiteProfiles Trp-Asp (WD) repeats profile. 625 666 IPR001680 GO:0005515
Lal21g0355 909 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 909 IPR044716 GO:0003714
Lal21g0355 909 MobiDBLite consensus disorder prediction 169 195 - -
Lal21g0355 909 Gene3D - 601 759 IPR015943 GO:0005515
Lal21g0355 909 SMART WD40_4 829 868 IPR001680 GO:0005515
Lal21g0355 909 SMART WD40_4 660 699 IPR001680 GO:0005515
Lal21g0355 909 SMART WD40_4 870 909 IPR001680 GO:0005515
Lal21g0355 909 SMART WD40_4 785 823 IPR001680 GO:0005515
Lal21g0355 909 SMART WD40_4 618 657 IPR001680 GO:0005515
Lal21g0355 909 SMART WD40_4 703 743 IPR001680 GO:0005515
Lal21g0355 909 MobiDBLite consensus disorder prediction 429 469 - -
Lal21g0355 909 SMART Lish 8 40 IPR006594 GO:0005515
Lal21g0355 909 ProSiteProfiles Trp-Asp (WD) repeats profile. 877 909 IPR001680 GO:0005515
Lal21g0355 909 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 909 - -
Lal21g0355 909 MobiDBLite consensus disorder prediction 429 563 - -
Lal21g0355 909 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 710 748 - -
Lal21g0355 909 MobiDBLite consensus disorder prediction 248 309 - -
Lal21g0355 909 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Lal21g0355 909 MobiDBLite consensus disorder prediction 480 540 - -
Lal21g0355 909 ProSiteProfiles Trp-Asp (WD) repeats profile. 792 832 IPR001680 GO:0005515
Lal21g0355 909 Pfam LisH 10 36 IPR006594 GO:0005515
Lal21g0355 909 MobiDBLite consensus disorder prediction 548 563 - -
Lal21g0355 909 Pfam WD domain, G-beta repeat 626 656 IPR001680 GO:0005515
Lal21g0355 909 Pfam WD domain, G-beta repeat 787 822 IPR001680 GO:0005515
Lal21g0355 909 Pfam WD domain, G-beta repeat 664 699 IPR001680 GO:0005515
Lal21g0355 909 Pfam WD domain, G-beta repeat 706 743 IPR001680 GO:0005515
Lal21g0355 909 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 667 702 - -
Lal21g0355 909 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 877 909 - -
Lal21g0355 909 MobiDBLite consensus disorder prediction 88 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0355 Lal-Chr21 2415742 2425163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0355 704 908 Miscellaneous Gene Families AT5G08390 24.762 1.60e-12 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lal21g0355 WD40 0.00087 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0355 - - gmx:100816263 1207.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0247 17 1535433 1544371 Lal21g0355 21 2415742 2425163 LSH
Lal21g0355 21 2415742 2425163 Lal4g0230 4 1445768 1453798 LSH