Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0340 ATGGTTGAAACAAAGGACGAAGGATACGAGGAGGAGCTTCTCGATTACGAAGAGGAAGAAGACAAAGCTCCCGATTCCGTTGGAGCCAAAGTCAACGGTGAAGCTACTAAGAAGGGCTATGTTGGAATTCACAGTTCAGGATTCAGAGACTTTCTTCTAAAGCCAGAGCTTCTTCGTGCTATTGTCGACTCGGGTTTTGAGCACCCTTCTGAAGGCAAATATCTTCATCCTTTTTTTGTTGCATTTGTGTTTGTAGTTGTTCTTGTTTTGTTGCAACATGAGTGCATACCTCAAGCAATTCTTGGAATGGATGTTATTTGTCAAGCTAAATCTGGAATGGGAAAAACTGCTGTCTTCGTTCTCTCATCTTTGCAGCAGATTGATCCTGTTCCAGGCCAAGTTTCTGCACTTGTTCTGTGTCACACAAGAGAGTTAGCATACCAGATATGCCATGAGTTTGAGAGGTTTAGCACCTACTTGCCTGATCTAAAGGTTGCTGTCTTTTATGGTGGAGTCAACATTAAAGTTCACAAGGATCTGTTGAGAAATGAATGTCCTCATATTGTTGTTGGTACCCCTGGAAGAATACTAGCATTGGCTAGGGATAAAGACCTTTCTTTGAAGAATGTTAGGCATTTCATTTTAGACGAATGTGATAAGATGCTAGAATCACTAGACATGAGAAAAGATGTGCAAGACATTTTCAAGATGACTCCCCATGATAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAAAAATTTATGCAAGATCCAATGGAAATTTATGTTGATGACGAGGCCAAGTTGACCCTTCATGGACTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAGAAGAACCGGAAGTTGAATGATCTTCTTGACGCCCTAGACTTCAACCAAGTTGTTATCTTTGTAAAAAGTGTTAGTAGAGCAGCTGAGCTGGACAAACTACTAGTGGAGTGCAACTTCCCATCTATATGCATTCACTCTGGCATGTCCCAGGAAGAGAGGTTGAAGCGTTATAAAGGTTTTAAGGAGGGCCATACGAGGATTCTTGTAGCGACGGATTTGGTTGGTAGGGGAATTGACATTGAGCGTGTCAATATTGTCATAAACTATGACATGCCCGATTCTGCAGACACATATTTGCACCGGGTTGGACGAGCTGGAAGATTTGGCACCAAAGGCCTTGCAATTACATTTGTTTCATGTTCTTCTGATGTTGATGTTCTCAACAATGTCCAGTCAAGGTTTGAGGTGGATATAAAGCAGCTTCCTGAGCAGATTGATACATCTACCTACATGTTTGGTGATACAATCATTTTGCAGGCTTGCAGGCTTCTTTCCATTGCCATCTTAGATGTTATTTCTGGGCAATGCTTTAAACAGCTTTGGATGGTAGAGAGTAGCTCTTGCAGATTTATTACATCCCTTGGTTGCACCACAGAGTTTTTGTGA 1485 0.4175 MVETKDEGYEEELLDYEEEEDKAPDSVGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKYLHPFFVAFVFVVVLVLLQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSSDVDVLNNVQSRFEVDIKQLPEQIDTSTYMFGDTIILQACRLLSIAILDVISGQCFKQLWMVESSSCRFITSLGCTTEFL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0340 494 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 281 442 IPR001650 -
Lal21g0340 494 CDD SF2_C_DEAD 282 411 - -
Lal21g0340 494 SMART ultradead3 84 285 IPR014001 -
Lal21g0340 494 Pfam DEAD/DEAH box helicase 92 255 IPR011545 GO:0003676|GO:0005524
Lal21g0340 494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 415 IPR027417 -
Lal21g0340 494 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 96 269 IPR014001 -
Lal21g0340 494 Gene3D - 278 446 IPR027417 -
Lal21g0340 494 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 441 - -
Lal21g0340 494 SMART helicmild6 321 402 IPR001650 -
Lal21g0340 494 CDD DEADc_DDX39 45 271 - -
Lal21g0340 494 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE ISOFORM X1 27 441 - -
Lal21g0340 494 MobiDBLite consensus disorder prediction 1 22 - -
Lal21g0340 494 Pfam Helicase conserved C-terminal domain 295 402 IPR001650 -
Lal21g0340 494 Gene3D - 42 277 IPR027417 -
Lal21g0340 494 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0340 Lal-Chr21 2275973 2281460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0340 22 444 Eukaryotic Initiation Factors Gene Family AT5G11200 80.172 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0340 K12812 - gmx:100808957 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0340 21 2275973 2281460 Lal21g0340 21 2275973 2281460 ECH
Lal21g0340 21 2275973 2281460 Lal4g0222 4 1393951 1403063 ECH
Lal17g0234 17 1447458 1452513 Lal21g0340 21 2275973 2281460 LSH
Lal21g0340 21 2275973 2281460 Lal4g0222 4 1393951 1403063 LSH