Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0338 ATGATGGTACAAACAAAGAAGTTCAGAGGAGTCAGGCAGCGCCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCACCCTTTATTGAAGAGGAGGGTGTGGCTAGGGACATTTGAGACAGCAGAGGCAGCAGCAAGGGCATATGACCAAGCAGCCATATTGATGAATGGTCAAAATGCTAAGACCAATTTCCCTACATCAAAGAATCAAGATGAAGATGTAACAACTTATGATGATGACTCTTTCTTATCACCCAAGGCACTATCAGAACTCCTTAGAACAAAGCTCAAGAAATGTTGCAAAGACCCTTCTCCATCCCTCACTTGTTTGAGGCTTGATGCTGATAATTCCCACATTGGAGTGTGGCAAAAAGGAGCAGGACCACGTTCTGACTCTAATTGGGTCATGAGGGTAGAGCTTGGTAACAAACAACACAAAGATAGTGGAATATCATCTACTTTGTTAACTGAGCCATCACCACAACACACTTGTGCTGAAAATGATAATAATAATAATAATAATAATGATGTTAATATTGTTGATGGAAATGAGGTATCAGAAGAGGATAGAGTTGCTATGCAGATGATTGAAGAGCTACTTAACTGGAACTATCCTTGTGGCTCAACTTCAAGTAACCCTCAGCAGAACCTTCCATGTCAAAGTTCTTGA 666 0.4159 MMVQTKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPTSKNQDEDVTTYDDDSFLSPKALSELLRTKLKKCCKDPSPSLTCLRLDADNSHIGVWQKGAGPRSDSNWVMRVELGNKQHKDSGISSTLLTEPSPQHTCAENDNNNNNNNDVNIVDGNEVSEEDRVAMQMIEELLNWNYPCGSTSSNPQQNLPCQSS 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0338 221 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Lal21g0338 221 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 2 208 - -
Lal21g0338 221 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Lal21g0338 221 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Lal21g0338 221 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 2 208 - -
Lal21g0338 221 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Lal21g0338 221 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Lal21g0338 221 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Lal21g0338 221 MobiDBLite consensus disorder prediction 144 179 - -
Lal21g0338 221 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Lal21g0338 221 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0338 Lal-Chr21 2263238 2264735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0338 2 209 AP2-EREBP Transcription Factor Family AT5G25390 58.173 4.95e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal21g0338 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0338 - - lang:109326202 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0338 21 2263238 2264735 Lal21g0338 21 2263238 2264735 ECH
Lal21g0338 21 2263238 2264735 Lal4g0221 4 1387798 1389541 ECH
Lal7g1263 7 18118597 18119901 Lal21g0338 21 2263238 2264735 ECH
Lal19g1382 19 16631403 16632663 Lal21g0338 21 2263238 2264735 ECH
Lal21g0338 21 2263238 2264735 Lal4g0221 4 1387798 1389541 LSH