Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0314 ATGGAAAAACTCATGAGTCAAGAACCTTATCTTTGTGATAACACTAGAGAGCTTCCTCAAAGTCCAAGTACACCATTGCAGAATCCACATGAAAATATGCAGCATCAATCTTTTGAGGAACAAGAACCAAAAAAGGAGGCAAACACAGTAGTTACCTTATTGGATCTGAATGTTCCTTGTGGTGATTCAGCTCTTGATTGCAGTAGTAGTCCAGAGCTGAATCCAATAACATGTTTGGAAATGGATTCAGCTAAGACTTCATCAGAAGAAAACCCTCCTGAACCTGAAGGTTTTGATGCAGCAGAGGCTAGAGTATTCTCTTGCAACTACTGCAAGAGAAAGTTCTACAGTTCACAAGCCCTAGGAGGACACCAAAATGCTCATAAGAGAGAAAGGTTAATAGCAAAGAGAGGTCAAAGGTTAGGAACACATATAATGGCTTCAGCTGCAGCTTTTGGAATACCTTTTCTTCATGATATTGCATCTCTACCACTTCATGGTAATAGACCACTTGGAATTCAAGCTCACTCTTTGATTCATAAACCTTCTCACTTTTCATCTAATATTATTGGGTTTGGAAGCACTTATGGACAACAACTACATGGTTGGTCAAGATCAAAACCCCTTATTAATCAACAACCTGGAATAGGGAAGCTAGCAATGGAAACTTCACACAAGAAAGGATTATCATCAAGAGAAAGCAGTGTTGGTAGATTTGAAGTGGTGAATAATGTTAGAAGTTCTATGCTCAATTATGAAACCAATGAAGAAACAAGTGGCTATGTTGTTACTGGAACTCGTTTGAAGACTAGTCATCAAGAAGATATGAAGCTTCTTGATTTATCCTTAAAGCTCTAA 858 0.3823 MEKLMSQEPYLCDNTRELPQSPSTPLQNPHENMQHQSFEEQEPKKEANTVVTLLDLNVPCGDSALDCSSSPELNPITCLEMDSAKTSSEENPPEPEGFDAAEARVFSCNYCKRKFYSSQALGGHQNAHKRERLIAKRGQRLGTHIMASAAAFGIPFLHDIASLPLHGNRPLGIQAHSLIHKPSHFSSNIIGFGSTYGQQLHGWSRSKPLINQQPGIGKLAMETSHKKGLSSRESSVGRFEVVNNVRSSMLNYETNEETSGYVVTGTRLKTSHQEDMKLLDLSLKL 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0314 285 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 285 - -
Lal21g0314 285 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Lal21g0314 285 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 14 285 IPR044246 GO:0009788
Lal21g0314 285 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Lal21g0314 285 MobiDBLite consensus disorder prediction 13 34 - -
Lal21g0314 285 SUPERFAMILY beta-beta-alpha zinc fingers 103 133 IPR036236 -
Lal21g0314 285 MobiDBLite consensus disorder prediction 1 45 - -
Lal21g0314 285 Gene3D Classic Zinc Finger 98 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0314 Lal-Chr21 2106016 2106873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0314 17 285 C2H2 Transcription Factor Family AT5G10970 40.845 2.07e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal21g0314 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0211 17 1296620 1297453 Lal21g0314 21 2106016 2106873 LSH
Lal21g0314 21 2106016 2106873 Lal4g0200 4 1251035 1251829 LSH
Lal10g0030 10 312041 312802 Lal21g0314 21 2106016 2106873 PCT
Lal21g0314 21 2106016 2106873 Lal10g0030 10 312041 312802 PCT