Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0313 ATGACAGTGGAGAATACTATGGTTGATCCCAGTGACCAGTTTCCTATAGGGATGCGTGTTCTTGCCGTAGATGATGACCCAACATGCCTCTTTGTTTTGGAAACTTTACTCAAAAGATGTCAATATCATGTAACCACGACTAATCAAGCGATAACAGCGTTGACGTTGTTGAGAGAAAACAATAACATGTTTGATCTGGTAATCAGTGATGTGCACATGCCGGACATGGATGGATTTAAACTGCTTGAGCTTGTTGGGCTTGAAATGGACCTACCTGTCATAATGTTGTCTGCAAACGGTGATAAGAAGATGGTGATGAAGGGGATTTCGCATGGAGCTTGCGATTATCTGCTGAAACCTGTGAGAATTGAGGAGCTAAAAAACATATGGCAGCATGTAATCAGGAGGAAGAAGTTTGATTCAAAGGACAAGAACAAAACTAACAACATAGACAAACCTACTTCTGATAGTGGCAATGGACTAAGGTCAGCAGGAAGAGAAAATTCAGATCAAAATGGAAAGAACAAAAAAAGGAAGGACCAGGACGATGAAGAAGATGAGGATCAAGAGAATGATAATGACAATGAAGACCCATCGGCACAGAAGAAGCCTCGGGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGTTAGGCATCGAAAAGGCTGTACCTAAAAAAATTCTTGATATGATGAATGTTGAAAAGCTTACGAGGGAGAATGTGGCCAGCCATCTCCAGGCAATTTTCTGGCTTTATCTGAAAAGAATTAGTTGTGTGGCAAACCAACAAGCTAATATGGTGGCAGCTTTAGGGAGTGCAGATCATTCCTTTTTGAGAATGGGTTCTATGAGTGGAGTTGGACATTTGCAAACATTGACTGGTTCTGGACAGTTTCATAACGGTTTTGGATCTTTTCCACCAAGCCGGGTGATTAGCCGATTGAACACTCCTGGTTTGAATGTGCATGGGTTTCATTCTCCTGGAGTACATCAGTTGGGTCAAACACAAAATTTAATTGACTCCAACAACGATCAACTTAAGTTCCAGCCGGCTGTAGTTCCCGTTAACCAGAATGGTGTTCAGGGAATGCCAGTGTCGGTAGGGCTTGATCAATTGCAACAGAATACAGGTGTGGTTTCTGTTCAAAACCTGACCATTGCTATTGATGCTAGAACAACTTTTCCCATCTCAAATAAACTCCCAGACCCAGGACCAAGAGTATCTGCCTGTGGCTCACACCCTCCTTCGCGTCTGGGTATCTCAAACAATGCCTTGGTGTTGGAAGGGAGTGTCGTATATGAAAATTCACCTACTTCAGCACACTCTCAACATTCAGAAGTTTCTTTATCTTTGCCGTATCAAGGTAGTAGATATCCCGATAATTGGTCAAGTGCTATGCAGCTATCTGGGATCCCGGCAAAATCTTTTAGTCAGACATCTCTACGTGGTATAGATAACATAGCATCTTTACCCTTACAAGGGGGGAATCTGGGAGGTCCTTTATCTGTCACTTCACTGTATGGTCAATCTCATGATTCCATGGCTGATATGCACTCCCAAGGTGTGATTTTTGCTAACAGACTTGGGCATATAAGGAGTAATGTGCCATTCCAAGATTGGGGTGACCACAATCAGGATACTACTTACCATTCAAATGTTAGCCGTAGCTCAATGAACCCTTTGAGTGCTCCAGTTAATGGTGCTGTTGGTCCAGCAGGCCATAACAAAAACTCGGACTTCAAATTTTGCGACCCCTTACAAATGAAGCATCATGGGATTGTGGAGTTAACTGCAGAGACCCCAATGAAACATGAAGGTAATATTGTGAACCAGCAGAAGTCTCAACAATGTCATTTGTCTAACAATATTGGTTCACTGGAAGACTTTGTCAATTCAATGATGAAACAGGAGCAAGATAATATGAAATTATTGGATGGAAACTTCATATGTGATAATTACTCAGGTGGGATACCTATGTGA 1998 0.4224 MTVENTMVDPSDQFPIGMRVLAVDDDPTCLFVLETLLKRCQYHVTTTNQAITALTLLRENNNMFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDKKMVMKGISHGACDYLLKPVRIEELKNIWQHVIRRKKFDSKDKNKTNNIDKPTSDSGNGLRSAGRENSDQNGKNKKRKDQDDEEDEDQENDNDNEDPSAQKKPRVVWSVELHRKFVAAVNQLGIEKAVPKKILDMMNVEKLTRENVASHLQAIFWLYLKRISCVANQQANMVAALGSADHSFLRMGSMSGVGHLQTLTGSGQFHNGFGSFPPSRVISRLNTPGLNVHGFHSPGVHQLGQTQNLIDSNNDQLKFQPAVVPVNQNGVQGMPVSVGLDQLQQNTGVVSVQNLTIAIDARTTFPISNKLPDPGPRVSACGSHPPSRLGISNNALVLEGSVVYENSPTSAHSQHSEVSLSLPYQGSRYPDNWSSAMQLSGIPAKSFSQTSLRGIDNIASLPLQGGNLGGPLSVTSLYGQSHDSMADMHSQGVIFANRLGHIRSNVPFQDWGDHNQDTTYHSNVSRSSMNPLSAPVNGAVGPAGHNKNSDFKFCDPLQMKHHGIVELTAETPMKHEGNIVNQQKSQQCHLSNNIGSLEDFVNSMMKQEQDNMKLLDGNFICDNYSGGIPM 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0313 665 MobiDBLite consensus disorder prediction 169 183 - -
Lal21g0313 665 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Lal21g0313 665 PIRSF RR_ARR_type-B 1 662 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lal21g0313 665 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 203 255 IPR006447 GO:0003677
Lal21g0313 665 Pfam Myb-like DNA-binding domain 205 252 IPR001005 -
Lal21g0313 665 Gene3D - 199 263 - -
Lal21g0313 665 SUPERFAMILY CheY-like 17 139 IPR011006 -
Lal21g0313 665 CDD REC_typeB_ARR-like 20 134 - -
Lal21g0313 665 MobiDBLite consensus disorder prediction 141 205 - -
Lal21g0313 665 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 640 IPR045279 GO:0009736
Lal21g0313 665 SMART REC_2 18 130 IPR001789 GO:0000160
Lal21g0313 665 Gene3D - 17 153 - -
Lal21g0313 665 MobiDBLite consensus disorder prediction 151 168 - -
Lal21g0313 665 SUPERFAMILY Homeodomain-like 201 256 IPR009057 -
Lal21g0313 665 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 640 - -
Lal21g0313 665 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Lal21g0313 665 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 263 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0313 Lal-Chr21 2090135 2094165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0313 1 660 Response Regulator Gene Family AT2G25180 43.631 5.16e-134 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lal21g0313 Response_reg 1.4e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0313 - K14491 gmx:100809002 891.338
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0210 17 1286464 1290820 Lal21g0313 21 2090135 2094165 LSH
Lal8g1571 8 20031602 20035036 Lal21g0313 21 2090135 2094165 PCT
Lal21g0313 21 2090135 2094165 Lal8g1571 8 20031602 20035036 PCT