Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal21g0312 | ATGAGTAGCTTGGTTGAGAGGCTTCGCGTAAGATCAGATCGCAAGCCAATTTATAATATAGATGACTCAGATGATGATGATTTTTTGCCTAGAAAACCTGGGACAACTCTGGAAAAGTTTGAGAGGATAGTTCGAAGTGATGTGAAAGAGAATTTGTGTCAAGCTTGTGGAGAAAATGGGAATTTTATTAGCTGTGACACATGCAATTATGTTTACCATCCTAAGTGTATACTTCCACCACTTAAAGGTCCCATTCCAATCATTTGGAGGTGCCCTGAATGTATTAGCCCACTTATTGATATCGATAAGATATTAGATTGTGAGGTACTCCCTACTGTAGCTGCAGATAGTGATGCTACAGTATCGGGGTCAAAGCAATTTCTTGTCAAACAATACCTTGTTAAGTGGAAGGGACTATCATATTTGCATTGCAGTTGGGTGCCAGAGAAAGATTTTCAGAATGCTTTCAAGACTTATCCTCGCCTAAGGACTAAACTGAACAACTTCCATCGTCAAATGGCATCGGTCAATACTTCTGAAGAAGATTTTGTTGCCATTCGACCTGAATGGATTACAGTCGACCGAGTACTTGCTTGCAGGGGTGACGATGATGAGAAGGAATATCTTGTGAAGTGGAAAGAGCTTCCATATGATGAATGCTATTGGGAGTATGAGTCAGACATTTCAGCATTTCAGCCGGAAATAGAAAGATTCAATAGATTACGTTCTAAGTCCAGCAAACTTTCTTCGCATAAACTAAAAAGCAGTGACAGAGATGACACTGAATTGAAGAAACAGCAGAAAGAATTCCAACAGTATGAAGATAACCCTGATTTTCTGTCGGGTGGTACACTGCACCCATATCAGCTTGAAGGCTTGAACTTCTTGCGGTTCTCTTGGTCCAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGGAAAACCATACAAAGTATCGCTTTTCTAGCAGCCCTTTTTGAAGAGGGCATTTCTCCACATCTGGTGGTTGCTCCACTTTCAACATTGAGAAACTGGGAACGTGAATTTGCAACATGGGCACCTCAAATGAATGTTATTATGTATGTTGGATCTGCCCAAGCTCGTGCTGTTATACGAGATCATGAATTTTACTTTCCAAAACAACAGAAGAAGATCAAGAAAAAGAAATCTGGCCAAATTGTTTGTGAAAGCAAGCAAGACAGGATTAAGTTTGATGTCCTTTTGACATCATATGAGATGATCAACTTGGACACAACTTCATTGAAACCTATAACATGGAATTGCATGATAGTTGATGAAGGTCACCGTCTCAAAAACAAGGATTCAAAATTATTTTCTTCATTGAAGCAGTACTCTACCAAACATCGTGTGCTCTTGACTGGGACTCCTCTTCAGAACAACCTGGACGAACTTTTCATGCTTATGCACTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAAGGATATCAATCAAGAGGAACAAATTTCAAGGCTTCATAAAATGTTGGCCCCACATCTGTTGCGAAGAGTGAAGAAAGATGTCATGAAGGAACTACCACCTAAAAAAGAACTTATTTTACGTGTTGAATTGAGCAGCAAACAGAAAGAATATTACAAGGCAATTTTGACCCGCAATTATCAGATATTAACTCGCCGTGGCGGTGCACAGATTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTCTGTTGTCATCCTTACATGCTAGAAGGAGTTGAACCAGATATTGGCGACGTGAATGAATCATTCAATCAGCTGCTAGAAACATCAGGGAAGTTGCAATTGCTAGACAAGATGATGGTGAAGCTTAAAGAGCAAGGACACAGAGTCCTCATATATTCCCAGTTTCAGCACATGCTTGATTTACTTGAAGATTATTGTTCTTACAAGAATTGGCATTATGAAAGGATAGATGGCAAAGTTGCTGGAGCTGAAAGACAAATACGTATAGATCGTTTTAATGCCAAGAATTCGTCAAGATTTTGCTTTCTTCTGTCTACCAGAGCTGGGGGGTTGGGGATAAACCTCGCAACTGCTGACACAGTCATTATATATGATAGTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCTAGAGCTCATCGACTTGGACAAACTAACAAGGTGTTGATTTATAGGCTTATAACACGGGGAACTATTGAAGAAAGGATGATGGAGTTGACAAAAAAGAAAATGGTTTTAGAGCATCTAGTTGTAGGGAGGCTAAAGGCTCAAAATATCAATCAGGAAGAGTTAGATGACATCATAAGGTATGGCTCAAAGGAGTTATTTTCGGATGAGAATGATGAAGCAGGCAAATCCCGCCAAATCCATTATGATGCTGCTGCTATTGATAGATTGTTGGATCGTGATCAAGTTGGAAATGAAGAGGTTACTTTGGAAGATGAAGATGAAGATGGATTTCTGAAGGCATTTAAGGTTGCAAATTTTGAGTATGTTGATGAAGCTCAGGCTGCAGCTGAGGAGGCAGCACAAAAAAGAGCAATGGAGACTCTGAACAGTTCAGAAAGGACACATTATTGGGAGGAGTTGTTAAAAGACAAGTATCAAGAGCATAGAGTTGAGGAGTTTAATTCCTTGGGCAAAGGGAAGCGAAATCGCAAGACAATTGTTTCTGTTGAGGAGGATGACCTTGCCGGTCTGGAAGATGTAAGCTCTGATGGTGAAGATGACAATTATGAAGCAGACCTTACTGATGGTGATTCAAATTCAACTGGAGCTACTTCTGCTAGAAGGCCTTATAAGAAGAAAGCTCGTGCAGAAAACACAGAACCGCTCCCTCTGATGGAAGGTGTAGGAAGATCTTTCAGGGTACTTGGCTTTAATCAAATTCAGAGGGCTATGTTTGTGCAAATTTTGATGAGGTTTGGGGTTGGTGACTTTGATTGGAAGGAGTTTACCCCCCGCATGAAACAGAAGACTTATGAAGAAATTAAAGATTATGGAATCCTTTTCTTCTCTCATATTGCTGAAGATATAACTGATTCCTCTACATTCGCAGATGGTGTTCCCAAAGAAGGTCTCCGAATACAAGATGTGCTTGTTAGGATTGCAATTCTATCCTTGATAAGGGACAAAGTGAAGTTTGCATCAGAAAATCCTCAAAATGCCCTGTTTTCAGATGACATATTATTACGCTATCCTGGTTTGAAGGGTGCAAAAATATGGAAGGAGGAGCATGATAGACTTTTGCTGCGTGCTGTGTTGAAGCATGGATATGGAAGGTGGCAAGCTATTGTTGATGATAAGGATCTGAATATTCAGGAGGTCATCTGTAAGGAGTTGAATCTTCCCCTTATAACTTTACCAGTCGCAGGACAAGTTGGCTGTAATGCACAAAATGGTGCAAATTTGACAAATGTGGAAGTGCCTAGCAACCAATGCCCGGAAAATGGTGGGAATGACATAGCAGCTGATGGTGCACAAGGTTCTGGTGATGCTAAGAACCAAACACAGTTATATCAAGATTCCATGGTACTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTGTAAAAAAGAGGGTCCTTCTCTTGGAAAAAGGACTCAATGTCGAGTACCAGGAAGAGTACTTTGCTAATCTAAAATCAAATGAAGAACATGAAAGTGAACCTGAGGATACAGGTTTTGAAAGTTATAAATTACGGGACCCTGACACCCAAGTGATTGATCAATTGCCTCAAGTGGAAGCAGTAGTTTTGGAAGACATTTCAGCTGCTGCTTGTGATAAGGATCCAAATCAATTGGAATTAGTTGGAGTTTACAATGAGATGTGCAAGGTAGTGAAGGAAAACCCAATAGATTCAGTTCAAAGATCTTCAGAAAGAGAACAAGCAGAGGGCAATATGGTGAAGAACACCCCTCCACTAGAAACCTTTTCCGAAGATATCAACCGACTCCGTACACCAACACAACAAGATCAGACTAATGCTGAAATGTCAGTATTCAATTCAGAAAACAAACCTGAGGCTGCTATATCAAAAGAGGACTGCAAACTTGATAACTTTGCAGACAATGAGAGCAAAGGCATGGTAATAGAGCCCAAACCTGAAAGTGAAAGCTGCTCAAGTCTGGTACATGAGAAGAAGGGAGATGATACTGAAATAGATGGAACTATGAATGATGCTGAACTGAATTAG | 4218 | 0.4023 | MSSLVERLRVRSDRKPIYNIDDSDDDDFLPRKPGTTLEKFERIVRSDVKENLCQACGENGNFISCDTCNYVYHPKCILPPLKGPIPIIWRCPECISPLIDIDKILDCEVLPTVAADSDATVSGSKQFLVKQYLVKWKGLSYLHCSWVPEKDFQNAFKTYPRLRTKLNNFHRQMASVNTSEEDFVAIRPEWITVDRVLACRGDDDEKEYLVKWKELPYDECYWEYESDISAFQPEIERFNRLRSKSSKLSSHKLKSSDRDDTELKKQQKEFQQYEDNPDFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLAALFEEGISPHLVVAPLSTLRNWEREFATWAPQMNVIMYVGSAQARAVIRDHEFYFPKQQKKIKKKKSGQIVCESKQDRIKFDVLLTSYEMINLDTTSLKPITWNCMIVDEGHRLKNKDSKLFSSLKQYSTKHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIGDVNESFNQLLETSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKNWHYERIDGKVAGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMELTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFSDENDEAGKSRQIHYDAAAIDRLLDRDQVGNEEVTLEDEDEDGFLKAFKVANFEYVDEAQAAAEEAAQKRAMETLNSSERTHYWEELLKDKYQEHRVEEFNSLGKGKRNRKTIVSVEEDDLAGLEDVSSDGEDDNYEADLTDGDSNSTGATSARRPYKKKARAENTEPLPLMEGVGRSFRVLGFNQIQRAMFVQILMRFGVGDFDWKEFTPRMKQKTYEEIKDYGILFFSHIAEDITDSSTFADGVPKEGLRIQDVLVRIAILSLIRDKVKFASENPQNALFSDDILLRYPGLKGAKIWKEEHDRLLLRAVLKHGYGRWQAIVDDKDLNIQEVICKELNLPLITLPVAGQVGCNAQNGANLTNVEVPSNQCPENGGNDIAADGAQGSGDAKNQTQLYQDSMVLYHFRDMQRRQVEFVKKRVLLLEKGLNVEYQEEYFANLKSNEEHESEPEDTGFESYKLRDPDTQVIDQLPQVEAVVLEDISAAACDKDPNQLELVGVYNEMCKVVKENPIDSVQRSSEREQAEGNMVKNTPPLETFSEDINRLRTPTQQDQTNAEMSVFNSENKPEAAISKEDCKLDNFADNESKGMVIEPKPESESCSSLVHEKKGDDTEIDGTMNDAELN | 1405 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal21g0312 | 1405 | MobiDBLite | consensus disorder prediction | 902 | 946 | - | - | |
| Lal21g0312 | 1405 | Pfam | Helicase conserved C-terminal domain | 608 | 721 | IPR001650 | - | |
| Lal21g0312 | 1405 | Gene3D | - | 277 | 527 | IPR038718 | - | |
| Lal21g0312 | 1405 | SUPERFAMILY | Chromo domain-like | 65 | 176 | IPR016197 | - | |
| Lal21g0312 | 1405 | CDD | CD2_tandem | 189 | 240 | - | - | |
| Lal21g0312 | 1405 | SMART | helicmild6 | 637 | 721 | IPR001650 | - | |
| Lal21g0312 | 1405 | Gene3D | - | 1035 | 1195 | - | - | |
| Lal21g0312 | 1405 | SMART | chromo_7 | 189 | 243 | IPR000953 | - | |
| Lal21g0312 | 1405 | SMART | chromo_7 | 98 | 164 | IPR000953 | - | |
| Lal21g0312 | 1405 | CDD | CD1_tandem | 101 | 171 | - | - | |
| Lal21g0312 | 1405 | MobiDBLite | consensus disorder prediction | 1380 | 1396 | - | - | |
| Lal21g0312 | 1405 | MobiDBLite | consensus disorder prediction | 1349 | 1363 | - | - | |
| Lal21g0312 | 1405 | ProSitePatterns | Zinc finger PHD-type signature. | 53 | 94 | IPR019786 | - | |
| Lal21g0312 | 1405 | CDD | SF2_C_SNF | 606 | 732 | - | - | |
| Lal21g0312 | 1405 | Gene3D | - | 528 | 752 | IPR027417 | - | |
| Lal21g0312 | 1405 | Gene3D | - | 99 | 174 | - | - | |
| Lal21g0312 | 1405 | MobiDBLite | consensus disorder prediction | 902 | 921 | - | - | |
| Lal21g0312 | 1405 | ProSiteProfiles | Chromo and chromo shadow domain profile. | 99 | 181 | IPR000953 | - | |
| Lal21g0312 | 1405 | SUPERFAMILY | Chromo domain-like | 177 | 241 | IPR016197 | - | |
| Lal21g0312 | 1405 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 520 | 779 | IPR027417 | - | |
| Lal21g0312 | 1405 | PANTHER | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED | 5 | 1053 | - | - | |
| Lal21g0312 | 1405 | Pfam | Chromo (CHRromatin Organisation MOdifier) domain | 192 | 240 | IPR023780 | - | |
| Lal21g0312 | 1405 | Pfam | Chromo (CHRromatin Organisation MOdifier) domain | 125 | 156 | IPR023780 | - | |
| Lal21g0312 | 1405 | Pfam | PHD-finger | 53 | 95 | IPR019787 | - | |
| Lal21g0312 | 1405 | ProSiteProfiles | Chromo and chromo shadow domain profile. | 191 | 250 | IPR000953 | - | |
| Lal21g0312 | 1405 | Pfam | CHD subfamily II, DUF1087 | 843 | 901 | IPR009463 | - | |
| Lal21g0312 | 1405 | Gene3D | - | 177 | 240 | - | - | |
| Lal21g0312 | 1405 | PANTHER | CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE | 5 | 1053 | - | - | |
| Lal21g0312 | 1405 | MobiDBLite | consensus disorder prediction | 1330 | 1347 | - | - | |
| Lal21g0312 | 1405 | MobiDBLite | consensus disorder prediction | 1297 | 1316 | - | - | |
| Lal21g0312 | 1405 | Pfam | SNF2-related domain | 305 | 585 | IPR000330 | GO:0005524|GO:0140658 | |
| Lal21g0312 | 1405 | Coils | Coil | 256 | 276 | - | - | |
| Lal21g0312 | 1405 | MobiDBLite | consensus disorder prediction | 250 | 268 | - | - | |
| Lal21g0312 | 1405 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 44 | 96 | IPR013083 | - | |
| Lal21g0312 | 1405 | SMART | DUF1087_2 | 838 | 904 | IPR009463 | - | |
| Lal21g0312 | 1405 | ProSiteProfiles | Zinc finger PHD-type profile. | 50 | 97 | IPR019787 | - | |
| Lal21g0312 | 1405 | SMART | DUF1086_2 | 909 | 1068 | IPR009462 | GO:0003677|GO:0006338 | |
| Lal21g0312 | 1405 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 238 | 518 | IPR027417 | - | |
| Lal21g0312 | 1405 | SMART | ultradead3 | 281 | 494 | IPR014001 | - | |
| Lal21g0312 | 1405 | Pfam | CHD subfamily II, SANT-like domain | 932 | 1065 | IPR009462 | GO:0003677|GO:0006338 | |
| Lal21g0312 | 1405 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 297 | 483 | IPR014001 | - | |
| Lal21g0312 | 1405 | MobiDBLite | consensus disorder prediction | 249 | 268 | - | - | |
| Lal21g0312 | 1405 | MobiDBLite | consensus disorder prediction | 1330 | 1405 | - | - | |
| Lal21g0312 | 1405 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 611 | 772 | IPR001650 | - | |
| Lal21g0312 | 1405 | SMART | PHD_3 | 52 | 95 | IPR001965 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal21g0312 | Lal-Chr21 | 2070464 | 2089699 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal21g0312 | 307 | 782 | RAD5 or RAD16-like Gene Family | AT1G02670 | 23.201 | 3.07e-31 | 130 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Lal21g0312 | SNF2_N | 1.2e-65 | CL0023 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal21g0312 | K11643 | - | gmx:100790230 | 2313.88 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal17g0208 | 17 | 1264026 | 1286029 | Lal21g0312 | 21 | 2070464 | 2089699 | LSH | |
| Lal25g1037 | 25 | 13728580 | 13746746 | Lal21g0312 | 21 | 2070464 | 2089699 | PCT | |
| Lal10g0031 | 10 | 324426 | 351865 | Lal21g0312 | 21 | 2070464 | 2089699 | PCT | |
| Lal21g0312 | 21 | 2070464 | 2089699 | Lal25g1037 | 25 | 13728580 | 13746746 | PCT | |
| Lal21g0312 | 21 | 2070464 | 2089699 | Lal10g0031 | 10 | 324426 | 351865 | PCT |