Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0297 ATGGGTTATCTCAATTCGGTTTTGTCCTCTTCAAGCCAGGTTCATGCTGCTGCTGATGCACCTATCACTGGTGGTGGTCTCAGTCACAACGGCAAATTCAGCTATGGGTATGCTAGCTCTCCTGGCAGGAGATCTTCAATGGAAGATTTTTACGAGACTAGAATCGATGGTGTTAATGGTGAAATCGTTGGCCTTTTTGGAGTTTTTGATGGTCATGGTGGTGTTCGTGCTGCTGAGTATGTCAAGCAAAACCTGTTTAGTAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATATCCGATGCATATAACCATACCGACTCCGAATTCCTGAAATCAGAACATAGTCATAACAGAGATGCTGGATCAACTGCTTCCACTGCAATTCTAGTTGGTGACCGCTTGCTTGTTGCAAATGTTGGGGACTCCAGAGCTGTTATATGCAGGGGTGGCAATGCCATTGCTGTTTCTCGAGATCACAAGCCAGACCAAACTGATGAGAGGCAAAGGATTGAAGATGCAGGTGGATTTGTCATGTGGGCTGGAACTTGGAGAGTTGGTGGAGTACTTGCTGTTTCTCGTGCATTTGGTGATAGACTCCTGAAGCAGTATGTTGTTGCTGATCCAGAAATCCAGGAAGAAAAGGTTGACGGCTCTCTTGAGTTTCTTATATTGGCCAGTGATGGGCTATGGGATGTTGTCTCAAATGAGGAAGCTGTTGCTATGGTTAAACCAATTGAGGATGCAGCAGAGGCAGCAAAGATCCTGTTGATAGAAGCATCTAAAAGGGGCAGTGCTGACAATATCACTTGTGTTGTTGTTCGTTTCTTGATGAACCAAGGCACAGCTTCTCATAGTAGCTTGAACCAATGTTCTTCTTCTCATAGTAGCTCTGTCTAA 912 0.4441 MGYLNSVLSSSSQVHAAADAPITGGGLSHNGKFSYGYASSPGRRSSMEDFYETRIDGVNGEIVGLFGVFDGHGGVRAAEYVKQNLFSNLISHPKFISDTKSAISDAYNHTDSEFLKSEHSHNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDGSLEFLILASDGLWDVVSNEEAVAMVKPIEDAAEAAKILLIEASKRGSADNITCVVVRFLMNQGTASHSSLNQCSSSHSSSV 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0297 303 Pfam Protein phosphatase 2C 61 273 IPR001932 -
Lal21g0297 303 Gene3D - 26 285 IPR036457 -
Lal21g0297 303 PANTHER PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C 3 299 - -
Lal21g0297 303 CDD PP2Cc 33 280 IPR001932 -
Lal21g0297 303 ProSiteProfiles PPM-type phosphatase domain profile. 34 280 IPR001932 -
Lal21g0297 303 SUPERFAMILY PP2C-like 28 280 IPR036457 -
Lal21g0297 303 SMART PP2C_SIG_2 45 280 IPR001932 -
Lal21g0297 303 SMART PP2C_4 24 278 IPR001932 -
Lal21g0297 303 ProSitePatterns PPM-type phosphatase domain signature. 65 73 IPR000222 GO:0043169
Lal21g0297 303 PANTHER ALPHABET, ISOFORM E-RELATED 3 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0297 Lal-Chr21 1969052 1974424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0297 1 299 PP2C-type Phosphatase Gene Family AT4G31750 84.950 0.0 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0297 K17506 - gmx:100797070 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0297 21 1969052 1974424 Lal21g0297 21 1969052 1974424 ECH
Lal17g0191 17 1160086 1165226 Lal21g0297 21 1969052 1974424 LSH
Lal21g0297 21 1969052 1974424 Lal4g0192 4 1184673 1190064 LSH