Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0293 ATGGCTTCCAAGCTCTGTGACTCTTGCAATTCCGCCACCGCCACCCTCTTCTGCCGCCCTGAATCCGCCTTCCTCTGCTCCTCATGTGATTCCAAAATCCATGCCGCCAACAAACTCTCCTCCCGTCATCCACGTGTCACACTCTGCGAGGTTTGCGAACATGCTCCTGCTCACGTGACATGCAAGGCTGATGCCGCTTCTCTTTGCTTCGCTTGCGATCGAGATATCCACACTGCTAACTCACTCGCCGCACGCCATGAACGCGTGCCTGTCACTCCCTTCTTTAACAACGATTCCATTGGTTCCGCTAGTAACTTCATCGATCATGATAACCGCTTCTTCACTAATGATGCTGATGATGACGTCAGCATCGAGGAAGCTGAGGCTGCGTCGTGGTTGCTACCTAACCCGAAGGGAACAGATCTGAACTCGTTTCCTGAAGTGGAGCCGGTTCCTTATGTAGATCTGGATTACGATCTGAAACCGGAGCAGCACAAAAGTTCCGCTGCTACCGATGGTGTTGTTCCAGTACAGAACAACGAGCCTTTCAGCTACGGTTACAAGTTCTATTGCTCACATTCACAGTCTCAAATGAGTCACAGTGTGTCATCGTCATCGATGGAGGTTGGTGTAGTGCCGGATGCGAACCCGATGTCGGAGATATACAGCAAGGTGGCGGTAGTGGAGGGAGGGAATCACGGTACGGGAGTGGCGGCGGATAGAGAAGCTAGGGTAATGAGGTACAGAGAGAAAAGGAAGAACCGAAAGTTCGAGAAGACTATTCGCTACGCTTCAAGGAAAGCTTATGCTGAAACTAGACCAAGGATCAAAGGGAGGTTTGCTAAACGCTCCGATTCTGATCATCACCCTCTCGCCGGGTACGGCGTCGTTCCGGCTTGTTAA 903 0.5161 MASKLCDSCNSATATLFCRPESAFLCSSCDSKIHAANKLSSRHPRVTLCEVCEHAPAHVTCKADAASLCFACDRDIHTANSLAARHERVPVTPFFNNDSIGSASNFIDHDNRFFTNDADDDVSIEEAEAASWLLPNPKGTDLNSFPEVEPVPYVDLDYDLKPEQHKSSAATDGVVPVQNNEPFSYGYKFYCSHSQSQMSHSVSSSSMEVGVVPDANPMSEIYSKVAVVEGGNHGTGVAADREARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSDSDHHPLAGYGVVPAC 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0293 300 Pfam CCT motif 241 283 IPR010402 GO:0005515
Lal21g0293 300 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 299 - -
Lal21g0293 300 SMART bboxneu5 1 48 IPR000315 GO:0008270
Lal21g0293 300 SMART bboxneu5 49 91 IPR000315 GO:0008270
Lal21g0293 300 CDD Bbox1_BBX-like 5 48 - -
Lal21g0293 300 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Lal21g0293 300 ProSiteProfiles CCT domain profile. 241 283 IPR010402 GO:0005515
Lal21g0293 300 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Lal21g0293 300 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Lal21g0293 300 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Lal21g0293 300 CDD Bbox1_BBX-like 48 91 - -
Lal21g0293 300 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 299 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0293 Lal-Chr21 1956434 1957904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0293 1 298 C2C2-CO-like Transcription Factor Family AT5G24930 50.409 1.56e-95 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lal21g0293 zf-B_box 2.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0293 - - gmx:100794431 409.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0293 21 1956434 1957904 Lal21g0293 21 1956434 1957904 ECH
Lal17g0188 17 1157658 1162659 Lal21g0293 21 1956434 1957904 LSH