Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0289 ATGGCGGAAGTTTTGCTAATGAAAGATATTGAAGCTACTGCTTCCCGTCTCGGAATTGATCTTTCTAGCATTGATCTCGATTCCATTCGTGTTCCCCCGGAGGATAATATTGGCATAGCTAGTGATGATGAAGATATTCTCCATGAGGAAAATCTGGAATCTGAGTCTGGATTTGGAAACGTTATAGTTGTGGATAATCTTCCCGTTGTTCCTAAGGAAAAATTTGAGAAGCTTGAAGCTGTCATTCATAAAATTTACAATCAGATTGGTGTTATTAAGGACGATGGACTCTGGATGCCCGTTGATCCTGACAATGAAAAAACTTTGGGTTATTGTTTCATTGAGTATAATACCACTCAGGAAGCTGAGCTTGCTAAAGAGAGGACTCATGGATACAAATTGGATCGCGCACACATATTTTCAGTGAACATGTTTGATGACTTTGACAGGCTCATGAAAGTTCCAGATCAGTGGGCTCCTCCTGAAACAAAGCCATATGCTCCCGGAGAAAATCTTCAACATTGGCTAACTGATGCAAAAGCCCGAGATCAGTTTGTGATACGTGCTGGTTCAGATACCGAGGTTTTGTGGAATGATGCAAGGCATTTGAAACCTGATCCTGTGTATAAGCGTACATTTTGGACTGAGAGCTTTGTTCAATGGTCGCCTCTGGGAACATACTTGGCAACAGTTCACAGGCAGGGAGCAGCTGTTTGGGGAGGTGCTACAACCTTCAACCGTCTTATGCGTTATGCTCATCCGCAGGTAAAACTTATTGATTTTTCACCTGGCGAGAAGTATTTGGTAACTTATAGCAGTCACGAACCCAGCAATCCCCGAGATGCTAATAGAGTTGTGATAAATATTTTTGATGTGAGGACTGGTAAATTGATGAGGGATTTTAAAGGAATTGCTGATGATTTTGCAATTGGAGGTGCTGGTGGTGTCACTGGGGTGTCATGGCCTGTTTTCAAATGGAGTAATGGAGGAGATGATAAGTATTTTGCAAGGATGGGAAAAAATGTACTATCTGTATATGAAACTGACACATTTTCTCTCGTTGACAAAAAGTCTTTAAAGGTTGAAAATATAATGGATTTCAGCTGGTCTCCAACTGATCCGATTATTGCACTCTTTGTTCCTGAGATGGGAGGCGGTAACCAGCCTGCTAGGGTAAGCCTGGTTCAAATCCCCAGCAAAGAGGAACTCAGGCAGAAAAATCTTTTCAGTGTCAGTGACTGCAAGATGTACTGGCAAAGCAATGGAGATTACCTTGCTGTTCATGTAGACCGGTTTACAAAAACCAAGAAAAGCACATATACAGGCTTTGAGCTATTCTACATCAAAGAACGTGACATACCTATTGAAGTTTTAGAGCTGGAGAACAAGAATGACAAGATCATCTCGTTTGCTTGGGAGCCAAAAGGCCATAGGTTTACAGTTATCCATGGTGATAACCCTAAGCCTGATGTTAGCATTTACTCAATGAGGACTGCTCAGCACACCGGCCGGGTTTCAAAGCTCACTACTTTGAAAGGGAAGCAGGCAAATGCTCTGTTTTGGTCACCAGCAGGTCGCTTCATTGTACTGGCAGGGTTGAAGGGCTTTAATGGGCAGTTGGAATTTTACAATGTTGATGAACTTGAAACCATGGCTACTACTGAACATTTTATGGCAACTGATATTGAATGGGATCCAACTGGAAGGTATGTTGCTACAGCTGTTACTTCAGTTCATGAAATGGAAAATGGGTTCAATATATGGTCTTTCAATGGCAAGCATCTCTATCGGATACTGAAGGATCACTTCTTTCAGTTCTTATGGCGTCCAAGGCCACTATCTTTCTTGAGTAGTGAGAAAGAGGAAGAGATTTCAAAGAGCTTGAAGAAGTACAGTAAGAAATATGAGGCGGAAGATCAAGACGTTTCATTGCTGCTAAGCGAGCAGGAGCGTGAGAAGCGTAGGTTGTTGAAAGAAGAGTGGGACAGGTGGGTCAATGAATGGAAGAGGTTGCAGGAAGAAGAAAAGTTATATAGGCAAAATCTGAGGGATGGAGAGGCTAGTGATGAAGAAGAGGAATATGAAGCCAAGGACATAGAAGTTGAGGAAGTGATCAATGTATCAGAAGAGGTCATTCACTTTGAATATGGTCAAGAGTGA 2160 0.4208 MAEVLLMKDIEATASRLGIDLSSIDLDSIRVPPEDNIGIASDDEDILHEENLESESGFGNVIVVDNLPVVPKEKFEKLEAVIHKIYNQIGVIKDDGLWMPVDPDNEKTLGYCFIEYNTTQEAELAKERTHGYKLDRAHIFSVNMFDDFDRLMKVPDQWAPPETKPYAPGENLQHWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRTFWTESFVQWSPLGTYLATVHRQGAAVWGGATTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKLMRDFKGIADDFAIGGAGGVTGVSWPVFKWSNGGDDKYFARMGKNVLSVYETDTFSLVDKKSLKVENIMDFSWSPTDPIIALFVPEMGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVHVDRFTKTKKSTYTGFELFYIKERDIPIEVLELENKNDKIISFAWEPKGHRFTVIHGDNPKPDVSIYSMRTAQHTGRVSKLTTLKGKQANALFWSPAGRFIVLAGLKGFNGQLEFYNVDELETMATTEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPLSFLSSEKEEEISKSLKKYSKKYEAEDQDVSLLLSEQEREKRRLLKEEWDRWVNEWKRLQEEEKLYRQNLRDGEASDEEEEYEAKDIEVEEVINVSEEVIHFEYGQE 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0289 719 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 60 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lal21g0289 719 CDD RRM_eIF3B 59 143 IPR034363 -
Lal21g0289 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
Lal21g0289 719 PIRSF Transl_init_eIF3b 6 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lal21g0289 719 SUPERFAMILY DPP6 N-terminal domain-like 217 598 - -
Lal21g0289 719 Gene3D - 391 637 IPR015943 GO:0005515
Lal21g0289 719 Gene3D - 179 384 IPR015943 GO:0005515
Lal21g0289 719 SUPERFAMILY RNA-binding domain, RBD 54 143 IPR035979 GO:0003676
Lal21g0289 719 Gene3D - 55 154 IPR012677 -
Lal21g0289 719 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 8 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lal21g0289 719 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Lal21g0289 719 PANTHER BNACNNG51870D PROTEIN 8 713 - -
Lal21g0289 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0289 Lal-Chr21 1915800 1921835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0289 9 713 Eukaryotic Initiation Factors Gene Family AT5G27640 75.354 0.0 1156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0289 K03253 - gmx:100779711 1275.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0178 17 1081410 1085709 Lal21g0289 21 1915800 1921835 LSH